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All interfaces > All interologs > Interface groups > group76 > 2Y8Y_A_B

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

2Y8Y_A
2Y8Y_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:23 [TYR] B:22 [A] 3.65 76.64
A:23 [TYR] B:23 [U] 4.89 76.64
A:26 [HIS] B:22 [A] 3.16 99.0
A:27 [ARG] B:22 [A] 3.24 84.75
A:27 [ARG] B:23 [U] 3.59 84.75
A:30 [SER] B:22 [A] 3.65 73.75
A:31 [LYS] B:22 [A] 4.39 64.96
A:34 [SER] B:22 [A] 2.68 base:BB, base:SC 74.08
A:34 [SER] B:23 [U] 3.65 74.08
A:35 [ARG] B:22 [A] 5.0 44.22
A:37 [LEU] B:22 [A] 3.36 11.54
A:38 [GLU] B:22 [A] 3.6 39.82
A:38 [GLU] B:23 [U] 2.76 base:SC 39.82
A:43 [ARG] B:20 [G] 2.8 B:7 [C] 78.27
A:104 [ALA] B:17 [U] 4.71 B:10 [A] 83.57
A:105 [LYS] B:15 [U] 4.94 70.83
A:105 [LYS] B:16 [G] 2.61 B:11 [C] 70.83
A:105 [LYS] B:17 [U] 3.3 B:10 [A] 70.83
A:106 [ARG] B:8 [C] 3.67 B:19 [G] 70.99
A:106 [ARG] B:9 [C] 3.53 B:18 [G] 70.99
A:106 [ARG] B:10 [A] 4.21 B:17 [U] 70.99
A:106 [ARG] B:16 [G] 3.12 B:11 [C] 70.99
A:106 [ARG] B:17 [U] 2.82 B:10 [A] base:SC 70.99
A:106 [ARG] B:18 [G] 2.85 B:9 [C] base:SC 70.99
A:106 [ARG] B:19 [G] 3.17 B:8 [C] base:SC 70.99
A:107 [LEU] B:5 [U] 4.0 43.11
A:107 [LEU] B:16 [G] 3.45 B:11 [C] 43.11
A:108 [ALA] B:14 [G] 3.84 38.61
A:108 [ALA] B:15 [U] 3.85 38.61
A:108 [ALA] B:16 [G] 2.91 B:11 [C] 38.61
A:109 [ALA] B:16 [G] 4.64 B:11 [C] 9.48
A:110 [THR] B:5 [U] 4.33 51.02
A:112 [LYS] B:5 [U] 3.5 69.59
A:112 [LYS] B:6 [C] 3.94 B:21 [DG] 69.59
A:112 [LYS] B:7 [C] 3.36 B:20 [G] 69.59
A:113 [ARG] B:6 [C] 3.74 B:21 [DG] 90.03
A:113 [ARG] B:7 [C] 3.58 B:20 [G] 90.03
A:113 [ARG] B:8 [C] 4.02 B:19 [G] 90.03
A:113 [ARG] B:19 [G] 3.01 B:8 [C] base:SC 90.03
A:113 [ARG] B:20 [G] 2.93 B:7 [C] base:SC, base:SC 90.03
A:114 [VAL] B:5 [U] 3.16 56.81
A:115 [ALA] B:5 [U] 4.65 67.25
A:117 [LYS] B:5 [U] 3.43 24.36
A:128 [ARG] B:17 [U] 3.36 B:10 [A] 82.89
A:128 [ARG] B:18 [G] 2.8 B:9 [C] 82.89
A:129 [ARG] B:18 [G] 3.3 B:9 [C] 81.28
A:129 [ARG] B:19 [G] 2.82 B:8 [C] 81.28
A:132 [GLU] B:17 [U] 4.21 B:10 [A] 36.65
A:132 [GLU] B:18 [G] 2.65 B:9 [C] 36.65
A:169 [LEU] B:6 [C] 3.37 B:21 [DG] 65.94
A:194 [ARG] B:19 [G] 3.86 B:8 [C] 47.23
A:194 [ARG] B:20 [G] 3.07 B:7 [C] 47.23
A:195 [GLY] B:19 [G] 4.58 B:8 [C] 98.95
A:197 [GLY] B:19 [G] 4.83 B:8 [C] 98.95
A:197 [GLY] B:20 [G] 4.88 B:7 [C] 98.95
A:200 [LYS] B:19 [G] 4.55 B:8 [C] 94.23
A:200 [LYS] B:20 [G] 2.75 B:7 [C] 94.23
A:201 [ALA] B:22 [A] 4.36 87.79

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group76 2Y8Y_A_B A: Cse3, Thermus thermophilus (genetically engineered) B: N/A Q53WG9 CRISPR transcript (pre-crRNA) processing endoribonuclease-related ✘

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2Y8Y_A_B 4C8Y_A_C 0.36 0.63 3.01 0.13 CRISPR transcript (pre-crRNA) processing endoribonuclease-related compare
2Y8Y_A_B 5H9F_K_L 0.37 0.72 1.89 0.22 CRISPR transcript (pre-crRNA) processing endoribonuclease-related compare
2Y8Y_A_B 4ILL_A_R 0.19 0.65 4.71 0.03 CRISPR transcript (pre-crRNA) processing endoribonuclease-related compare