Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
2Y8Y_A
|
2Y8Y_B
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
---|---|---|---|---|---|---|
A:23 [TYR] | B:22 [A] | 3.65 | 76.64 | |||
A:23 [TYR] | B:23 [U] | 4.89 | 76.64 | |||
A:26 [HIS] | B:22 [A] | 3.16 | 99.0 | |||
A:27 [ARG] | B:22 [A] | 3.24 | 84.75 | |||
A:27 [ARG] | B:23 [U] | 3.59 | 84.75 | |||
A:30 [SER] | B:22 [A] | 3.65 | 73.75 | |||
A:31 [LYS] | B:22 [A] | 4.39 | 64.96 | |||
A:34 [SER] | B:22 [A] | 2.68 | base:BB, base:SC | 74.08 | ||
A:34 [SER] | B:23 [U] | 3.65 | 74.08 | |||
A:35 [ARG] | B:22 [A] | 5.0 | 44.22 | |||
A:37 [LEU] | B:22 [A] | 3.36 | 11.54 | |||
A:38 [GLU] | B:22 [A] | 3.6 | 39.82 | |||
A:38 [GLU] | B:23 [U] | 2.76 | base:SC | 39.82 | ||
A:43 [ARG] | B:20 [G] | 2.8 | B:7 [C] | 78.27 | ||
A:104 [ALA] | B:17 [U] | 4.71 | B:10 [A] | 83.57 | ||
A:105 [LYS] | B:15 [U] | 4.94 | 70.83 | |||
A:105 [LYS] | B:16 [G] | 2.61 | B:11 [C] | 70.83 | ||
A:105 [LYS] | B:17 [U] | 3.3 | B:10 [A] | 70.83 | ||
A:106 [ARG] | B:8 [C] | 3.67 | B:19 [G] | 70.99 | ||
A:106 [ARG] | B:9 [C] | 3.53 | B:18 [G] | 70.99 | ||
A:106 [ARG] | B:10 [A] | 4.21 | B:17 [U] | 70.99 | ||
A:106 [ARG] | B:16 [G] | 3.12 | B:11 [C] | 70.99 | ||
A:106 [ARG] | B:17 [U] | 2.82 | B:10 [A] | base:SC | 70.99 | |
A:106 [ARG] | B:18 [G] | 2.85 | B:9 [C] | base:SC | 70.99 | |
A:106 [ARG] | B:19 [G] | 3.17 | B:8 [C] | base:SC | 70.99 | |
A:107 [LEU] | B:5 [U] | 4.0 | 43.11 | |||
A:107 [LEU] | B:16 [G] | 3.45 | B:11 [C] | 43.11 | ||
A:108 [ALA] | B:14 [G] | 3.84 | 38.61 | |||
A:108 [ALA] | B:15 [U] | 3.85 | 38.61 | |||
A:108 [ALA] | B:16 [G] | 2.91 | B:11 [C] | 38.61 | ||
A:109 [ALA] | B:16 [G] | 4.64 | B:11 [C] | 9.48 | ||
A:110 [THR] | B:5 [U] | 4.33 | 51.02 | |||
A:112 [LYS] | B:5 [U] | 3.5 | 69.59 | |||
A:112 [LYS] | B:6 [C] | 3.94 | B:21 [DG] | 69.59 | ||
A:112 [LYS] | B:7 [C] | 3.36 | B:20 [G] | 69.59 | ||
A:113 [ARG] | B:6 [C] | 3.74 | B:21 [DG] | 90.03 | ||
A:113 [ARG] | B:7 [C] | 3.58 | B:20 [G] | 90.03 | ||
A:113 [ARG] | B:8 [C] | 4.02 | B:19 [G] | 90.03 | ||
A:113 [ARG] | B:19 [G] | 3.01 | B:8 [C] | base:SC | 90.03 | |
A:113 [ARG] | B:20 [G] | 2.93 | B:7 [C] | base:SC, base:SC | 90.03 | |
A:114 [VAL] | B:5 [U] | 3.16 | 56.81 | |||
A:115 [ALA] | B:5 [U] | 4.65 | 67.25 | |||
A:117 [LYS] | B:5 [U] | 3.43 | 24.36 | |||
A:128 [ARG] | B:17 [U] | 3.36 | B:10 [A] | 82.89 | ||
A:128 [ARG] | B:18 [G] | 2.8 | B:9 [C] | 82.89 | ||
A:129 [ARG] | B:18 [G] | 3.3 | B:9 [C] | 81.28 | ||
A:129 [ARG] | B:19 [G] | 2.82 | B:8 [C] | 81.28 | ||
A:132 [GLU] | B:17 [U] | 4.21 | B:10 [A] | 36.65 | ||
A:132 [GLU] | B:18 [G] | 2.65 | B:9 [C] | 36.65 | ||
A:169 [LEU] | B:6 [C] | 3.37 | B:21 [DG] | 65.94 | ||
A:194 [ARG] | B:19 [G] | 3.86 | B:8 [C] | 47.23 | ||
A:194 [ARG] | B:20 [G] | 3.07 | B:7 [C] | 47.23 | ||
A:195 [GLY] | B:19 [G] | 4.58 | B:8 [C] | 98.95 | ||
A:197 [GLY] | B:19 [G] | 4.83 | B:8 [C] | 98.95 | ||
A:197 [GLY] | B:20 [G] | 4.88 | B:7 [C] | 98.95 | ||
A:200 [LYS] | B:19 [G] | 4.55 | B:8 [C] | 94.23 | ||
A:200 [LYS] | B:20 [G] | 2.75 | B:7 [C] | 94.23 | ||
A:201 [ALA] | B:22 [A] | 4.36 | 87.79 |
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
---|---|---|---|---|---|---|---|
group76 | 2Y8Y_A_B | A: Cse3, Thermus thermophilus (genetically engineered) B: N/A | Q53WG9 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | ✘ |
Interologs
Total number of interologs for this interface: 3
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
2Y8Y_A_B | 5H9F_K_L | 0.37 | 0.72 | 1.89 | 0.22 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
2Y8Y_A_B | 4C8Y_A_C | 0.36 | 0.63 | 3.01 | 0.13 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
2Y8Y_A_B | 4ILL_A_R | 0.19 | 0.65 | 4.71 | 0.03 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare |