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All interfaces > All interologs > Interface groups > group76 > 4C8Y_A_C

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4C8Y_A
4C8Y_C
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:19 [LEU] C:30 [U] 2.87 65.01
A:20 [GLY] C:30 [U] 3.1 71.95
A:21 [LEU] C:30 [U] 4.69 72.6
A:22 [ARG] C:29 [A] 2.83 91.41
A:23 [GLY] C:29 [A] 3.92 87.29
A:23 [GLY] C:30 [U] 3.33 87.29
A:24 [PHE] C:30 [U] 3.26 57.94
A:26 [TYR] C:27 [G] 4.22 C:18 [C] 83.39
A:26 [TYR] C:29 [A] 3.36 83.39
A:27 [GLY] C:29 [A] 4.88 26.47
A:29 [LEU] C:29 [A] 4.76 70.5
A:30 [ARG] C:29 [A] 3.61 66.53
A:33 [ALA] C:29 [A] 4.79 87.51
A:34 [PRO] C:29 [A] 2.96 base:BB 64.19
A:37 [HIS] C:27 [G] 3.24 C:18 [C] sugar:BB 99.0
A:37 [HIS] C:29 [A] 3.11 base/AA stacks 99.0
A:38 [ASP] C:27 [G] 4.43 C:18 [C] 52.33
A:39 [GLN] C:27 [G] 3.45 C:18 [C] 37.2
A:40 [GLY] C:26 [G] 2.53 C:19 [C] sugar:BB 19.32
A:40 [GLY] C:27 [G] 3.22 C:18 [C] 19.32
A:41 [GLU] C:26 [G] 4.51 C:19 [C] 36.77
A:41 [GLU] C:27 [G] 4.79 C:18 [C] 36.77
A:42 [ASN] C:27 [G] 3.22 C:18 [C] 84.78
A:83 [ARG] C:30 [U] 2.69 base:BB 66.27
A:84 [LEU] C:30 [U] 3.97 86.27
A:85 [GLY] C:30 [U] 3.01 base:BB 77.68
A:127 [PHE] C:26 [G] 4.89 C:19 [C] 81.18
A:128 [PHE] C:25 [G] 4.6 C:20 [C] 98.63
A:128 [PHE] C:26 [G] 3.47 C:19 [C] 98.63
A:129 [ARG] C:17 [C] 3.64 C:28 [DG] 84.01
A:129 [ARG] C:18 [C] 4.34 C:27 [G] 84.01
A:129 [ARG] C:25 [G] 3.31 C:20 [C] 84.01
A:129 [ARG] C:26 [G] 2.93 C:19 [C] base:SC, base:SC 84.01
A:129 [ARG] C:27 [G] 2.65 C:18 [C] base:SC, base:SC 84.01
A:130 [ARG] C:25 [G] 4.08 C:20 [C] 74.8
A:131 [LYS] C:25 [G] 4.37 C:20 [C] 44.79
A:133 [VAL] C:15 [A] 4.07 45.19
A:133 [VAL] C:16 [G] 4.81 45.19
A:141 [ARG] C:24 [A] 3.49 C:21 [G] sugar:SC 50.2
A:142 [LEU] C:24 [A] 4.95 C:21 [G] 77.83
A:142 [LEU] C:25 [G] 3.13 C:20 [C] 77.83
A:142 [LEU] C:26 [G] 4.55 C:19 [C] 77.83
A:145 [GLU] C:24 [A] 4.46 C:21 [G] 52.21
A:145 [GLU] C:25 [G] 3.43 C:20 [C] sugar:SC 52.21
A:145 [GLU] C:26 [G] 4.5 C:19 [C] 52.21
A:146 [SER] C:26 [G] 3.61 C:19 [C] 95.54
A:149 [ARG] C:25 [G] 2.63 C:20 [C] sugar:SC 71.59
A:149 [ARG] C:26 [G] 3.11 C:19 [C] 71.59
A:186 [GLU] C:16 [G] 4.36 50.44
A:187 [VAL] C:16 [G] 3.96 36.98
A:224 [GLY] C:26 [G] 3.57 C:19 [C] 98.95
A:224 [GLY] C:27 [G] 4.36 C:18 [C] 98.95
A:225 [ALA] C:26 [G] 4.24 C:19 [C] 74.63
A:225 [ALA] C:27 [G] 3.45 C:18 [C] 74.63
A:226 [LYS] C:27 [G] 3.04 C:18 [C] 86.24
A:227 [THR] C:27 [G] 4.05 C:18 [C] 97.34
A:228 [SER] C:27 [G] 4.85 C:18 [C] 83.98

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group76 4C8Y_A_C A: Cas6a, Thermus thermophilus (genetically engineered) C: R1 repeat RNA substrate mimic Q5SM65 CRISPR transcript (pre-crRNA) processing endoribonuclease-related ✘

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4C8Y_A_C 4ILL_A_R 0.32 0.77 2.74 0.03 CRISPR transcript (pre-crRNA) processing endoribonuclease-related compare
4C8Y_A_C 6H9H_B_E 0.33 0.64 2.28 0.13 CRISPR transcript (pre-crRNA) processing endoribonuclease-related compare
2Y8Y_A_B 4C8Y_A_C 0.36 0.63 3.01 0.13 CRISPR transcript (pre-crRNA) processing endoribonuclease-related compare
4C8Y_A_C 5H9F_K_L 0.16 0.56 2.78 0.07 CRISPR transcript (pre-crRNA) processing endoribonuclease-related compare