Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 4ILL_A
|
4ILL_R
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| A:22 [PRO] | R:17 [A] | 4.29 | 59.94 | |||
| A:25 [LYS] | R:17 [A] | 3.58 | 93.14 | |||
| A:28 [LYS] | R:16 [A] | 3.63 | R:6 [U] | 98.0 | ||
| A:28 [LYS] | R:17 [A] | 3.1 | 98.0 | |||
| A:28 [LYS] | R:19 [U] | 4.99 | 98.0 | |||
| A:29 [TYR] | R:17 [A] | 4.58 | 59.34 | |||
| A:29 [TYR] | R:20 [G] | 3.58 | base:SC | 59.34 | ||
| A:32 [GLN] | R:17 [A] | 3.17 | base:SC | 47.17 | ||
| A:32 [GLN] | R:19 [U] | 3.41 | base/AA stacks | 47.17 | ||
| A:33 [SER] | R:20 [G] | 3.14 | 82.44 | |||
| A:41 [LYS] | R:19 [U] | 4.94 | 53.84 | |||
| A:41 [LYS] | R:20 [G] | 3.64 | 53.84 | |||
| A:41 [LYS] | R:21 [A] | 3.27 | 53.84 | |||
| A:44 [ILE] | R:16 [A] | 4.09 | R:6 [U] | 76.15 | ||
| A:45 [THR] | R:19 [U] | 3.51 | 18.54 | |||
| A:46 [SER] | R:15 [G] | 3.97 | R:7 [C] | 94.46 | ||
| A:47 [ARG] | R:9 [A] | 3.43 | 70.91 | |||
| A:47 [ARG] | R:11 [U] | 3.47 | 70.91 | |||
| A:47 [ARG] | R:14 [A] | 3.43 | R:8 [U] | 70.91 | ||
| A:47 [ARG] | R:15 [G] | 3.85 | R:7 [C] | 70.91 | ||
| A:48 [ASP] | R:11 [U] | 2.57 | base:SC | 64.56 | ||
| A:48 [ASP] | R:14 [A] | 3.93 | R:8 [U] | 64.56 | ||
| A:48 [ASP] | R:15 [G] | 3.45 | R:7 [C] | 64.56 | ||
| A:49 [LYS] | R:11 [U] | 3.44 | base:BB | 73.26 | ||
| A:49 [LYS] | R:12 [A] | 3.03 | 73.26 | |||
| A:49 [LYS] | R:13 [U] | 3.77 | 73.26 | |||
| A:49 [LYS] | R:14 [A] | 3.42 | R:8 [U] | 73.26 | ||
| A:49 [LYS] | R:15 [G] | 4.3 | R:7 [C] | 73.26 | ||
| A:50 [TYR] | R:13 [U] | 2.88 | sugar:SC | 70.04 | ||
| A:50 [TYR] | R:14 [A] | 3.35 | R:8 [U] | 70.04 | ||
| A:50 [TYR] | R:15 [G] | 3.2 | R:7 [C] | 70.04 | ||
| A:51 [LYS] | R:15 [G] | 3.04 | R:7 [C] | 98.0 | ||
| A:51 [LYS] | R:16 [A] | 2.72 | R:6 [U] | 98.0 | ||
| A:146 [LEU] | R:16 [A] | 4.82 | R:6 [U] | 74.87 | ||
| A:148 [SER] | R:13 [U] | 3.8 | 94.56 | |||
| A:148 [SER] | R:14 [A] | 2.99 | R:8 [U] | 94.56 | ||
| A:150 [LYS] | R:13 [U] | 3.1 | 96.05 | |||
| A:151 [VAL] | R:13 [U] | 3.52 | 78.0 | |||
| A:151 [VAL] | R:14 [A] | 4.19 | R:8 [U] | 78.0 | ||
| A:153 [LEU] | R:13 [U] | 3.72 | 77.22 | |||
| A:154 [PRO] | R:13 [U] | 4.26 | 89.68 | |||
| A:155 [PRO] | R:13 [U] | 3.39 | 91.44 | |||
| A:158 [SER] | R:13 [U] | 3.63 | 42.09 | |||
| A:162 [LYS] | R:10 [C] | 2.84 | base:SC | 74.97 | ||
| A:162 [LYS] | R:12 [A] | 3.42 | sugar:SC | 74.97 | ||
| A:162 [LYS] | R:13 [U] | 4.02 | 74.97 | |||
| A:164 [ILE] | R:13 [U] | 4.62 | 52.28 | |||
| A:165 [HIS] | R:5 [A] | 4.15 | 59.83 | |||
| A:166 [ALA] | R:5 [A] | 4.37 | 28.84 | |||
| A:167 [GLY] | R:5 [A] | 3.24 | 75.5 | |||
| A:168 [TYR] | R:5 [A] | 2.67 | base:BB, base:BB | 64.18 | ||
| A:168 [TYR] | R:6 [U] | 2.62 | R:16 [A] | base:SC | 64.18 | |
| A:168 [TYR] | R:15 [G] | 4.82 | R:7 [C] | 64.18 | ||
| A:168 [TYR] | R:16 [A] | 4.06 | R:6 [U] | 64.18 | ||
| A:170 [THR] | R:5 [A] | 4.37 | 76.52 | |||
| A:180 [TYR] | R:13 [U] | 4.08 | 71.34 | |||
| A:180 [TYR] | R:14 [A] | 2.46 | R:8 [U] | 71.34 | ||
| A:220 [THR] | R:5 [A] | 3.29 | 96.1 | |||
| A:223 [ILE] | R:6 [U] | 4.39 | R:16 [A] | 78.09 | ||
| A:223 [ILE] | R:16 [A] | 3.76 | R:6 [U] | 78.09 | ||
| A:227 [SER] | R:7 [C] | 3.81 | R:15 [G] | 21.3 | ||
| A:227 [SER] | R:17 [A] | 4.5 | 21.3 | |||
| A:230 [ASN] | R:7 [C] | 3.3 | R:15 [G] | 68.03 | ||
| A:231 [LEU] | R:6 [U] | 3.5 | R:16 [A] | 74.35 | ||
| A:231 [LEU] | R:7 [C] | 4.71 | R:15 [G] | 74.35 | ||
| A:232 [ARG] | R:6 [U] | 3.3 | R:16 [A] | 96.98 | ||
| A:232 [ARG] | R:7 [C] | 3.25 | R:15 [G] | base:SC | 96.98 | |
| A:232 [ARG] | R:15 [G] | 4.46 | R:7 [C] | 96.98 | ||
| A:232 [ARG] | R:16 [A] | 3.59 | R:6 [U] | 96.98 | ||
| A:232 [ARG] | R:17 [A] | 4.33 | 96.98 | |||
| A:233 [LYS] | R:5 [A] | 3.64 | 46.88 | |||
| A:233 [LYS] | R:6 [U] | 3.38 | R:16 [A] | sugar:BB | 46.88 | |
| A:234 [ALA] | R:5 [A] | 3.52 | 73.8 | |||
| A:234 [ALA] | R:6 [U] | 4.17 | R:16 [A] | 73.8 | ||
| A:235 [ARG] | R:4 [A] | 3.88 | 94.27 | |||
| A:235 [ARG] | R:5 [A] | 3.53 | 94.27 | |||
| A:267 [GLY] | R:14 [A] | 4.98 | R:8 [U] | 97.1 | ||
| A:267 [GLY] | R:15 [G] | 4.8 | R:7 [C] | 97.1 | ||
| A:268 [ARG] | R:6 [U] | 4.51 | R:16 [A] | 89.36 | ||
| A:268 [ARG] | R:7 [C] | 4.23 | R:15 [G] | 89.36 | ||
| A:268 [ARG] | R:14 [A] | 2.94 | R:8 [U] | base/AA stacks | 89.36 | |
| A:268 [ARG] | R:15 [G] | 2.8 | R:7 [C] | base:SC, base:SC | 89.36 | |
| A:268 [ARG] | R:16 [A] | 4.66 | R:6 [U] | 89.36 | ||
| A:269 [SER] | R:15 [G] | 3.01 | R:7 [C] | 96.58 | ||
| A:269 [SER] | R:16 [A] | 2.7 | R:6 [U] | base:SC, base:SC | 96.58 | |
| A:270 [ARG] | R:14 [A] | 4.78 | R:8 [U] | 98.49 | ||
| A:270 [ARG] | R:15 [G] | 2.76 | R:7 [C] | 98.49 | ||
| A:270 [ARG] | R:16 [A] | 4.61 | R:6 [U] | 98.49 | ||
| A:271 [GLY] | R:16 [A] | 3.62 | R:6 [U] | 97.1 | ||
| A:272 [ILE] | R:16 [A] | 3.66 | R:6 [U] | 96.17 | ||
| A:272 [ILE] | R:17 [A] | 3.96 | 96.17 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group76 | 4ILL_A_R | A: Crispr-associated endoribonuclease cas6 2, Sulfolobus solfataricus (genetically engineered) R: N/A | Q97WV8 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | ✘ |
|
Interologs
Total number of interologs for this interface: 3
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4C8Y_A_C | 4ILL_A_R | 0.32 | 0.77 | 2.74 | 0.03 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
| 2Y8Y_A_B | 4ILL_A_R | 0.19 | 0.65 | 4.71 | 0.03 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
| 4ILL_A_R | 5H9F_K_L | 0.31 | 0.57 | 3.39 | 0.11 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare |