Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Interface
show interface as licoriceCommon contacts -
5H9F_K
|
5H9F_L
|
6H9H_B
|
6H9H_E
|
Conserved?
|
---|---|---|---|---|
K:20 [HIS] | L:61 [23G] | B:23 [ARG] | E:22 [23G] | ✔ |
K:159 [GLN] | L:45 [U] | B:218 [GLY] | E:4 [U] | ✔ |
K:186 [ALA] | L:61 [23G] | B:239 [LEU] | E:22 [23G] | ✔ |
K:188 [SER] | L:61 [23G] | B:241 [SER] | E:22 [23G] | ✔ |
K:187 [LYS] | L:60 [G] | B:240 [THR] | E:21 [G] | ✔ |
K:114 [VAL] | L:45 [U] | B:155 [GLY] | E:4 [U] | ✔ |
K:158 [ILE] | L:45 [U] | B:217 [VAL] | E:4 [U] | ✔ |
K:185 [PRO] | L:59 [G] | B:238 [ASN] | E:20 [G] | ✔ |
K:115 [PRO] | L:44 [U] | B:156 [LEU] | E:3 [G] | ✔ |
K:115 [PRO] | L:45 [U] | B:156 [LEU] | E:4 [U] | ✔ |
K:157 [LYS] | L:45 [U] | B:216 [PHE] | E:4 [U] | ✔ |
K:93 [ILE] | L:45 [U] | B:153 [LYS] | E:4 [U] | ✔ |
K:156 [GLY] | L:45 [U] | B:206 [LEU] | E:4 [U] | ❌ 6H9H_B_E |
K:156 [GLY] | L:46 [C] | B:206 [LEU] | E:5 [U] | ❌ 6H9H_B_E |
K:114 [VAL] | L:44 [U] | B:155 [GLY] | E:3 [G] | ❌ 6H9H_B_E |
K:158 [ILE] | L:46 [C] | B:217 [VAL] | E:5 [U] | ❌ 6H9H_B_E |
K:158 [ILE] | L:61 [23G] | B:217 [VAL] | E:22 [23G] | ❌ 6H9H_B_E |
K:157 [LYS] | L:46 [C] | B:216 [PHE] | E:5 [U] | ❌ 6H9H_B_E |
K:184 [GLY] | L:59 [G] | B:237 [GLY] | E:20 [G] | ❌ 6H9H_B_E |
K:93 [ILE] | L:58 [G] | B:153 [LYS] | E:19 [G] | ❌ 6H9H_B_E |
K:93 [ILE] | L:60 [G] | B:153 [LYS] | E:21 [G] | ❌ 5H9F_K_L |
K:93 [ILE] | L:46 [C] | B:153 [LYS] | E:5 [U] | ❌ 5H9F_K_L |
K:93 [ILE] | L:61 [23G] | B:153 [LYS] | E:22 [23G] | ❌ 5H9F_K_L |
K:94 [LYS] | L:45 [U] | B:154 [ARG] | E:4 [U] | ❌ 5H9F_K_L |
K:94 [LYS] | L:58 [G] | B:154 [ARG] | E:19 [G] | ❌ 5H9F_K_L |
K:94 [LYS] | L:46 [C] | B:154 [ARG] | E:5 [U] | ❌ 5H9F_K_L |
K:94 [LYS] | L:56 [G] | B:154 [ARG] | E:18 [C] | ❌ 5H9F_K_L |
K:116 [LEU] | L:44 [U] | B:157 [THR] | E:3 [G] | ❌ 5H9F_K_L |
K:117 [ILE] | L:44 [U] | B:158 [LYS] | E:3 [G] | ❌ 5H9F_K_L |
K:156 [GLY] | L:47 [C] | B:206 [LEU] | E:6 [C] | ❌ 5H9F_K_L |
K:156 [GLY] | L:61 [23G] | B:206 [LEU] | E:22 [23G] | ❌ 5H9F_K_L |
K:157 [LYS] | L:44 [U] | B:216 [PHE] | E:3 [G] | ❌ 5H9F_K_L |
K:158 [ILE] | L:44 [U] | B:217 [VAL] | E:3 [G] | ❌ 5H9F_K_L |
K:159 [GLN] | L:44 [U] | B:218 [GLY] | E:3 [G] | ❌ 5H9F_K_L |
K:184 [GLY] | L:60 [G] | B:237 [GLY] | E:21 [G] | ❌ 5H9F_K_L |
K:185 [PRO] | L:60 [G] | B:238 [ASN] | E:21 [G] | ❌ 5H9F_K_L |
K:185 [PRO] | L:61 [23G] | B:238 [ASN] | E:22 [23G] | ❌ 5H9F_K_L |
K:186 [ALA] | L:60 [G] | B:239 [LEU] | E:21 [G] | ❌ 5H9F_K_L |
K:187 [LYS] | L:61 [23G] | B:240 [THR] | E:22 [23G] | ❌ 5H9F_K_L |
K:188 [SER] | L:60 [G] | B:241 [SER] | E:21 [G] | ❌ 5H9F_K_L |
K:36 [ASP] | L:60 [G] | B:83 [GLY] | E:21 [G] | ❌ 6H9H_B:83 no longer at interface |
K:36 [ASP] | L:61 [23G] | B:83 [GLY] | E:22 [23G] | ❌ 6H9H_B:83 no longer at interface |
K:91 [ASN] | L:45 [U] | B:151 [VAL] | E:4 [U] | ❌ 6H9H_B:151 no longer at interface |
K:125 [TRP] | L:58 [G] | B:165 [GLN] | E:19 [G] | ❌ 6H9H_B:165 no longer at interface |
K:21 [GLN] | L:61 [23G] | B:24 [GLU] | E:22 [23G] | ❌ 6H9H_B:24 no longer at interface |
K:92 [PRO] | L:45 [U] | B:152 [MET] | E:4 [U] | ❌ 5H9F_K:92 no longer at interface |
K:129 [LYS] | L:59 [G] | B:169 [ARG] | E:20 [G] | ❌ 5H9F_K:129 no longer at interface |
K:129 [LYS] | L:58 [G] | B:169 [ARG] | E:19 [G] | ❌ 5H9F_K:129 no longer at interface |
K:144 [GLU] | L:44 [U] | B:201 [PRO] | E:3 [G] | ❌ 5H9F_K:144 no longer at interface |
K:145 [ARG] | L:44 [U] | B:202 [ARG] | E:3 [G] | ❌ 5H9F_K:145 no longer at interface |
K:146 [PRO] | L:44 [U] | B:203 [GLY] | E:3 [G] | ❌ 5H9F_K:146 no longer at interface |
K:189 [MET] | L:61 [23G] | B:242 [ARG] | E:22 [23G] | ❌ 5H9F_K:189 no longer at interface |
K:25 [HIS] | L:61 [23G] | B:36 [PHE] | E:22 [23G] | ❌ 5H9F_K:25 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.55 | 3.17 | 0.07 | 0.62 | 0.27 | 0.63 | 0.77 | 0.27 | 0.20 | 0.07 | 0.32 |
Other pairs involving 5H9F_K_L or 6H9H_B_E
Total number of entries: 5
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
4C8Y_A_C | 6H9H_B_E | 0.33 | 0.64 | 2.28 | 0.13 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
4C8Y_A_C | 5H9F_K_L | 0.16 | 0.56 | 2.78 | 0.07 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
5H9F_K_L | 6H9H_B_E | 0.27 | 0.55 | 3.17 | 0.07 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
4ILL_A_R | 5H9F_K_L | 0.31 | 0.57 | 3.39 | 0.11 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
2Y8Y_A_B | 5H9F_K_L | 0.37 | 0.72 | 1.89 | 0.22 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare |