RNAprotDB

All interfaces > All interologs > Interface groups > group77 > 4V9F_G_0

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

4V9F_G
4V9F_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
G:6 [GLU] 0:1148 [C] 4.53 67.6
G:7 [ARG] 0:1147 [C] 4.91 0:1216 [G] 12.33
G:7 [ARG] 0:1148 [C] 2.91 base:SC, base:SC 12.33
G:7 [ARG] 0:1149 [U] 3.49 12.33
G:7 [ARG] 0:1215 [A] 3.39 0:1151 [G] 12.33
G:7 [ARG] 0:1216 [G] 2.95 0:1147 [C] base/AA stacks 12.33
G:8 [LYS] 0:1148 [C] 3.89 0.13
G:8 [LYS] 0:1149 [U] 3.1 sugar:SC 0.13
G:8 [LYS] 0:1150 [A] 3.22 0.13
G:9 [THR] 0:1147 [C] 4.98 0:1216 [G] 29.64
G:9 [THR] 0:1148 [C] 2.67 29.64
G:9 [THR] 0:1149 [U] 2.52 29.64
G:10 [GLU] 0:1147 [C] 2.98 0:1216 [G] 35.14
G:10 [GLU] 0:1148 [C] 3.78 base:SC 35.14
G:11 [THR] 0:1148 [C] 4.65 36.79
G:12 [ILE] 0:1149 [U] 4.53 56.23
G:12 [ILE] 0:1150 [A] 3.51 56.23
G:13 [PRO] 0:1148 [C] 3.34 55.74
G:13 [PRO] 0:1150 [A] 4.8 55.74
G:15 [TRP] 0:1210 [G] 4.95 0:1157 [C] 0.36
G:16 [LYS] 0:1148 [C] 4.79 98.95
G:16 [LYS] 0:1149 [U] 3.57 98.95
G:16 [LYS] 0:1150 [A] 2.77 sugar:SC 98.95
G:16 [LYS] 0:1151 [G] 2.79 0:1215 [A] 98.95
G:17 [GLN] 0:1150 [A] 3.84 36.17
G:19 [GLU] 0:1188 [A] 4.54 9.34
G:20 [VAL] 0:1150 [A] 3.7 81.05
G:38 [ILE] 0:1188 [A] 4.18 67.43
G:39 [ALA] 0:1158 [G] 4.84 0:1209 [C] 8.65
G:40 [GLY] 0:1158 [G] 3.58 0:1209 [C] 60.12
G:41 [ILE] 0:1158 [G] 4.34 0:1209 [C] 74.97
G:41 [ILE] 0:1159 [G] 3.29 0:1208 [C] 74.97
G:42 [PRO] 0:1159 [G] 3.13 0:1208 [C] 80.5
G:42 [PRO] 0:1160 [G] 3.47 0:1207 [A] 80.5
G:43 [SER] 0:1159 [G] 3.12 0:1208 [C] 83.67
G:43 [SER] 0:1160 [G] 2.73 0:1207 [A] 83.67
G:43 [SER] 0:1161 [A] 3.15 0:1185 [U] 83.67
G:43 [SER] 0:1189 [A] 3.84 83.67
G:43 [SER] 0:1190 [G] 2.91 0:1186 [C] base:SC 83.67
G:44 [ARG] 0:1160 [G] 4.13 0:1207 [A] 27.64
G:44 [ARG] 0:1161 [A] 3.09 0:1185 [U] 27.64
G:44 [ARG] 0:1162 [G] 3.59 0:1184 [C] 27.64
G:46 [LEU] 0:1188 [A] 4.32 62.84
G:46 [LEU] 0:1189 [A] 4.54 62.84
G:47 [GLN] 0:1161 [A] 3.04 0:1185 [U] base:SC 85.5
G:47 [GLN] 0:1162 [G] 4.18 0:1184 [C] 85.5
G:47 [GLN] 0:1186 [C] 3.33 0:1190 [G] 85.5
G:47 [GLN] 0:1190 [G] 4.25 0:1186 [C] 85.5
G:50 [ARG] 0:1187 [U] 2.72 sugar:SC 94.61
G:50 [ARG] 0:1188 [A] 3.17 base:SC 94.61
G:50 [ARG] 0:1189 [A] 4.8 94.61
G:59 [LEU] 0:1187 [U] 4.86 73.11
G:59 [LEU] 0:1188 [A] 3.73 73.11
G:60 [ARG] 0:1188 [A] 3.17 51.21
G:61 [VAL] 0:1188 [A] 2.71 86.31
G:62 [SER] 0:1188 [A] 3.91 72.47
G:62 [SER] 0:1210 [G] 3.81 0:1157 [C] 72.47
G:62 [SER] 0:1211 [G] 4.46 0:1156 [C] 72.47
G:63 [ARG] 0:1150 [A] 4.72 86.18
G:63 [ARG] 0:1151 [G] 2.36 0:1215 [A] 86.18
G:63 [ARG] 0:1152 [A] 4.4 0:1214 [G] 86.18
G:63 [ARG] 0:1210 [G] 2.69 0:1157 [C] 86.18
G:63 [ARG] 0:1211 [G] 3.25 0:1156 [C] 86.18
G:64 [ASN] 0:1210 [G] 4.28 0:1157 [C] 84.84
G:64 [ASN] 0:1211 [G] 2.77 0:1156 [C] 84.84
G:64 [ASN] 0:1212 [C] 4.11 0:1155 [G] 84.84
G:65 [THR] 0:1150 [A] 4.08 62.76
G:65 [THR] 0:1151 [G] 2.67 0:1215 [A] 62.76
G:65 [THR] 0:1211 [G] 4.69 0:1156 [C] 62.76
G:66 [LEU] 0:1150 [A] 3.82 81.29
G:69 [ARG] 0:1150 [A] 3.12 base/AA stacks 50.41
G:86 [THR] 0:1211 [G] 4.46 0:1156 [C] 12.03
G:86 [THR] 0:1212 [C] 3.9 0:1155 [G] 12.03
G:87 [GLY] 0:1211 [G] 3.25 0:1156 [C] 74.63
G:87 [GLY] 0:1212 [C] 3.09 0:1155 [G] 74.63
G:88 [GLN] 0:1157 [C] 4.85 0:1210 [G] 60.1
G:88 [GLN] 0:1158 [G] 3.84 0:1209 [C] sugar:SC 60.1
G:88 [GLN] 0:1210 [G] 3.07 0:1157 [C] base:SC 60.1
G:88 [GLN] 0:1211 [G] 3.34 0:1156 [C] 60.1
G:89 [VAL] 0:1210 [G] 4.97 0:1157 [C] 59.32
G:118 [GLU] 0:1158 [G] 4.91 0:1209 [C] 67.04
G:177 [ASN] 0:1203 [G] 3.85 0:1196 [C] 38.03
G:180 [ASN] 0:1203 [G] 4.75 0:1196 [C] 56.98

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group77 4V9F_G_0 G: 50s ribosomal protein l10e, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P15825 Ribosomal protein L10-like & Insertion domain in 60S ribosomal protein rpP0 (L10P) Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4V9F_G_0 7O7Y_Bs_B5 0.76 0.92 3.39 0.3 Ribosomal protein L10-like & Insertion domain in 60S ribosomal protein rpP0 (L10P) compare
4V9F_G_0 7N1P_LJ_23 0.59 0.9 3.4 0.52 Ribosomal protein L10-like compare
4V9F_G_0 4YBB_DI_DA 0.32 0.89 5.57 0.03 Ribosomal protein L10-like compare
4V9F_G_0 7OF0_I_A 0.35 0.92 5.66 0.05 Ribosomal protein L10-like compare