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All interfaces > All interologs > Interface groups > group77 > 7N1P_LJ_23

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7N1P_LJ
7N1P_23
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
LJ:3 [LEU] 23:1043 [C] 3.7 23:1112 [G] 70.02
LJ:4 [ASN] 23:1044 [C] 4.99 51.06
LJ:5 [LEU] 23:1044 [C] 4.85 67.55
LJ:5 [LEU] 23:1046 [A] 3.59 67.55
LJ:8 [LYS] 23:1044 [C] 3.98 98.98
LJ:8 [LYS] 23:1045 [C] 4.71 98.98
LJ:8 [LYS] 23:1046 [A] 3.26 sugar:SC 98.98
LJ:8 [LYS] 23:1047 [G] 4.21 23:1111 [A] 98.98
LJ:9 [GLN] 23:1046 [A] 2.91 base:SC, base:SC 41.9
LJ:12 [VAL] 23:1046 [A] 3.84 91.59
LJ:31 [ARG] 23:1107 [G] 4.51 23:1052 [C] 61.66
LJ:32 [GLY] 23:1054 [A] 4.85 23:1105 [U] 94.65
LJ:33 [VAL] 23:1054 [A] 4.85 23:1105 [U] 69.33
LJ:34 [THR] 23:1055 [G] 4.93 23:1104 [C] 64.24
LJ:34 [THR] 23:1056 [G] 4.91 23:1103 [A] 64.24
LJ:35 [VAL] 23:1055 [G] 3.35 23:1104 [C] 90.62
LJ:35 [VAL] 23:1056 [G] 3.78 23:1103 [A] 90.62
LJ:35 [VAL] 23:1057 [A] 4.96 23:1081 [U] 90.62
LJ:35 [VAL] 23:1084 [A] 3.3 90.62
LJ:35 [VAL] 23:1085 [A] 3.28 23:1083 [U] 90.62
LJ:36 [ASP] 23:1056 [G] 3.55 23:1103 [A] 50.25
LJ:36 [ASP] 23:1057 [A] 3.16 23:1081 [U] sugar:SC 50.25
LJ:42 [ARG] 23:1082 [U] 2.71 23:1086 [A] sugar:SC 99.0
LJ:42 [ARG] 23:1083 [U] 3.66 23:1085 [A] 99.0
LJ:52 [MET] 23:1084 [A] 4.48 36.02
LJ:53 [ARG] 23:1084 [A] 4.96 64.58
LJ:55 [VAL] 23:1107 [G] 4.77 23:1052 [C] 80.88
LJ:56 [ARG] 23:1046 [A] 4.61 95.03
LJ:56 [ARG] 23:1047 [G] 2.7 23:1111 [A] 95.03
LJ:56 [ARG] 23:1105 [U] 5.0 23:1054 [A] 95.03
LJ:56 [ARG] 23:1106 [G] 2.64 23:1053 [C] 95.03
LJ:56 [ARG] 23:1107 [G] 3.05 23:1052 [C] 95.03
LJ:57 [ASN] 23:1107 [G] 4.94 23:1052 [C] 98.98
LJ:57 [ASN] 23:1108 [U] 3.59 23:1051 [G] 98.98
LJ:58 [THR] 23:1046 [A] 3.58 sugar:SC 89.56
LJ:58 [THR] 23:1047 [G] 3.72 23:1111 [A] 89.56
LJ:59 [LEU] 23:1046 [A] 3.57 91.18
LJ:62 [ARG] 23:1046 [A] 3.32 base/AA stacks 71.62
LJ:78 [GLY] 23:1107 [G] 4.5 23:1052 [C] 94.65
LJ:78 [GLY] 23:1108 [U] 3.69 23:1051 [G] 94.65
LJ:79 [PRO] 23:1107 [G] 4.37 23:1052 [C] 79.86
LJ:79 [PRO] 23:1108 [U] 4.82 23:1051 [G] 79.86

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group77 7N1P_LJ_23 LJ: 50s ribosomal protein l10, Escherichia coli (strain k12) (natural) 23: 23s rRNA, Escherichia coli k-12 (natural) P0A7J3 Ribosomal protein L10-like Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4YBB_DI_DA 7N1P_LJ_23 0.50 0.99 3.95 0.26 Ribosomal protein L10-like Bacterial large subunit ribosomal RNA compare
4V9F_G_0 7N1P_LJ_23 0.59 0.9 3.4 0.52 Ribosomal protein L10-like compare