Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7O7Y_Bs
|
7O7Y_B5
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| Bs:6 [ARG] | B5:1957 [C] | 4.75 | B5:1908 [G] | 44.43 | ||
| Bs:6 [ARG] | B5:1958 [C] | 3.57 | B5:1907 [G] | 44.43 | ||
| Bs:9 [TRP] | B5:1937 [A] | 3.07 | 32.72 | |||
| Bs:9 [TRP] | B5:1938 [A] | 2.77 | 32.72 | |||
| Bs:9 [TRP] | B5:1958 [C] | 4.77 | B5:1907 [G] | 32.72 | ||
| Bs:9 [TRP] | B5:1959 [U] | 4.46 | B5:1906 [A] | 32.72 | ||
| Bs:10 [LYS] | B5:1899 [A] | 4.0 | 96.37 | |||
| Bs:13 [TYR] | B5:1937 [A] | 4.01 | 26.3 | |||
| Bs:16 [LYS] | B5:1937 [A] | 2.77 | 52.95 | |||
| Bs:34 [ASN] | B5:1907 [G] | 3.29 | B5:1958 [C] | sugar:SC | 75.44 | |
| Bs:34 [ASN] | B5:1908 [G] | 4.7 | B5:1957 [C] | 75.44 | ||
| Bs:35 [VAL] | B5:1907 [G] | 4.65 | B5:1958 [C] | 78.39 | ||
| Bs:35 [VAL] | B5:1908 [G] | 3.21 | B5:1957 [C] | 78.39 | ||
| Bs:35 [VAL] | B5:1937 [A] | 4.91 | 78.39 | |||
| Bs:36 [GLY] | B5:1908 [G] | 3.36 | B5:1957 [C] | 59.99 | ||
| Bs:36 [GLY] | B5:1909 [A] | 4.31 | B5:1956 [A] | 59.99 | ||
| Bs:37 [SER] | B5:1908 [G] | 3.39 | B5:1957 [C] | 85.19 | ||
| Bs:37 [SER] | B5:1909 [A] | 3.27 | B5:1956 [A] | 85.19 | ||
| Bs:37 [SER] | B5:1910 [C] | 3.31 | B5:1934 [G] | sugar:SC | 85.19 | |
| Bs:37 [SER] | B5:1938 [A] | 3.87 | 85.19 | |||
| Bs:37 [SER] | B5:1939 [G] | 4.92 | B5:1935 [C] | 85.19 | ||
| Bs:38 [LYS] | B5:1909 [A] | 3.05 | B5:1956 [A] | 40.09 | ||
| Bs:38 [LYS] | B5:1910 [C] | 3.22 | B5:1934 [G] | 40.09 | ||
| Bs:38 [LYS] | B5:1911 [G] | 4.12 | B5:1933 [C] | 40.09 | ||
| Bs:40 [MET] | B5:1937 [A] | 4.88 | 60.2 | |||
| Bs:40 [MET] | B5:1938 [A] | 4.23 | 60.2 | |||
| Bs:41 [GLN] | B5:1910 [C] | 4.24 | B5:1934 [G] | 77.25 | ||
| Bs:41 [GLN] | B5:1911 [G] | 3.78 | B5:1933 [C] | 77.25 | ||
| Bs:41 [GLN] | B5:1934 [G] | 3.53 | B5:1910 [C] | 77.25 | ||
| Bs:41 [GLN] | B5:1935 [C] | 3.74 | B5:1939 [G] | 77.25 | ||
| Bs:44 [ARG] | B5:1935 [C] | 2.93 | B5:1939 [G] | sugar:SC, sugar:SC | 93.26 | |
| Bs:44 [ARG] | B5:1936 [U] | 3.18 | sugar:SC | 93.26 | ||
| Bs:44 [ARG] | B5:1937 [A] | 4.51 | 93.26 | |||
| Bs:44 [ARG] | B5:1938 [A] | 4.62 | 93.26 | |||
| Bs:48 [ARG] | B5:1935 [C] | 3.42 | B5:1939 [G] | 78.28 | ||
| Bs:48 [ARG] | B5:1936 [U] | 3.06 | 78.28 | |||
| Bs:53 [VAL] | B5:1936 [U] | 4.48 | 64.62 | |||
| Bs:53 [VAL] | B5:1937 [A] | 3.72 | 64.62 | |||
| Bs:54 [LEU] | B5:1937 [A] | 3.22 | 51.99 | |||
| Bs:55 [MET] | B5:1937 [A] | 2.68 | sugar:BB | 69.17 | ||
| Bs:56 [GLY] | B5:1937 [A] | 3.75 | 74.32 | |||
| Bs:56 [GLY] | B5:1959 [U] | 3.69 | B5:1906 [A] | 74.32 | ||
| Bs:56 [GLY] | B5:1960 [G] | 3.79 | B5:1905 [C] | 74.32 | ||
| Bs:57 [LYS] | B5:1900 [G] | 3.89 | B5:1964 [A] | 95.13 | ||
| Bs:57 [LYS] | B5:1901 [A] | 4.33 | B5:1963 [G] | 95.13 | ||
| Bs:57 [LYS] | B5:1959 [U] | 3.24 | B5:1906 [A] | 95.13 | ||
| Bs:57 [LYS] | B5:1960 [G] | 3.03 | B5:1905 [C] | 95.13 | ||
| Bs:58 [ASN] | B5:1959 [U] | 4.47 | B5:1906 [A] | 90.88 | ||
| Bs:58 [ASN] | B5:1960 [G] | 2.47 | B5:1905 [C] | 90.88 | ||
| Bs:58 [ASN] | B5:1961 [C] | 4.33 | B5:1904 [G] | 90.88 | ||
| Bs:59 [THR] | B5:1899 [A] | 3.67 | 86.2 | |||
| Bs:59 [THR] | B5:1900 [G] | 4.08 | B5:1964 [A] | 86.2 | ||
| Bs:59 [THR] | B5:1960 [G] | 4.84 | B5:1905 [C] | 86.2 | ||
| Bs:60 [MET] | B5:1899 [A] | 2.99 | 68.71 | |||
| Bs:60 [MET] | B5:1900 [G] | 4.86 | B5:1964 [A] | 68.71 | ||
| Bs:63 [LYS] | B5:1899 [A] | 2.97 | base:SC | 35.91 | ||
| Bs:83 [ARG] | B5:1961 [C] | 3.31 | B5:1904 [G] | 49.66 | ||
| Bs:84 [GLY] | B5:1960 [G] | 3.34 | B5:1905 [C] | 73.31 | ||
| Bs:84 [GLY] | B5:1961 [C] | 3.43 | B5:1904 [G] | 73.31 | ||
| Bs:85 [ASN] | B5:1959 [U] | 3.87 | B5:1906 [A] | 81.85 | ||
| Bs:85 [ASN] | B5:1960 [G] | 3.86 | B5:1905 [C] | 81.85 | ||
| Bs:112 [ARG] | B5:1907 [G] | 3.76 | B5:1958 [C] | 80.23 | ||
| Bs:112 [ARG] | B5:1908 [G] | 4.14 | B5:1957 [C] | 80.23 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group77 | 7O7Y_Bs_B5 | Bs: 60s acidic ribosomal protein p0, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) | G1SPK4 | Ribosomal protein L10-like & Insertion domain in 60S ribosomal protein rpP0 (L10P) | Eukaryotic large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 2
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4YBB_DI_DA | 7O7Y_Bs_B5 | 0.48 | 0.87 | 5.66 | 0.15 | Ribosomal protein L10-like | compare | |
| 4V9F_G_0 | 7O7Y_Bs_B5 | 0.76 | 0.92 | 3.39 | 0.3 | Ribosomal protein L10-like & Insertion domain in 60S ribosomal protein rpP0 (L10P) | compare |