Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7OF0_I
|
7OF0_A
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| I:38 [ARG] | A:2112 [A] | 3.56 | A:2980 [U] | 71.09 | ||
| I:41 [HIS] | A:2101 [C] | 4.38 | A:2120 [G] | 81.77 | ||
| I:41 [HIS] | A:2102 [A] | 3.89 | A:2119 [U] | 81.77 | ||
| I:41 [HIS] | A:2136 [C] | 3.5 | A:2129 [G] | 81.77 | ||
| I:41 [HIS] | A:2137 [C] | 4.0 | A:2128 [G] | 81.77 | ||
| I:42 [PHE] | A:2136 [C] | 4.49 | A:2129 [G] | 46.6 | ||
| I:42 [PHE] | A:2153 [A] | 4.21 | A:2248 [U] | 46.6 | ||
| I:43 [GLN] | A:2137 [C] | 3.96 | A:2128 [G] | 42.45 | ||
| I:46 [LYS] | A:2137 [C] | 4.7 | A:2128 [G] | 86.85 | ||
| I:46 [LYS] | A:2152 [A] | 4.28 | A:2249 [G] | 86.85 | ||
| I:46 [LYS] | A:2153 [A] | 3.33 | A:2248 [U] | 86.85 | ||
| I:78 [LEU] | A:2195 [A] | 4.26 | 39.27 | |||
| I:81 [LEU] | A:2195 [A] | 4.03 | 37.04 | |||
| I:85 [GLU] | A:2194 [U] | 3.09 | 51.41 | |||
| I:106 [ALA] | A:2167 [A] | 4.93 | 48.61 | |||
| I:106 [ALA] | A:2168 [U] | 4.03 | A:2192 [A] | 48.61 | ||
| I:110 [LEU] | A:2168 [U] | 3.58 | A:2192 [A] | 28.89 | ||
| I:113 [ARG] | A:2193 [U] | 3.21 | 70.64 | |||
| I:123 [MET] | A:2194 [U] | 3.75 | 63.36 | |||
| I:124 [LYS] | A:2193 [U] | 4.4 | 72.2 | |||
| I:124 [LYS] | A:2194 [U] | 2.84 | 72.2 | |||
| I:125 [VAL] | A:2194 [U] | 2.56 | base:BB, base:BB | 37.58 | ||
| I:125 [VAL] | A:2195 [A] | 4.14 | 37.58 | |||
| I:125 [VAL] | A:2216 [A] | 4.58 | 37.58 | |||
| I:126 [PHE] | A:2194 [U] | 3.87 | 68.36 | |||
| I:126 [PHE] | A:2216 [A] | 4.63 | 68.36 | |||
| I:127 [PRO] | A:2215 [C] | 4.65 | 70.08 | |||
| I:127 [PRO] | A:2216 [A] | 3.16 | 70.08 | |||
| I:127 [PRO] | A:2217 [C] | 4.03 | 70.08 | |||
| I:128 [ASN] | A:2216 [A] | 4.72 | 84.84 | |||
| I:128 [ASN] | A:2217 [C] | 2.65 | 84.84 | |||
| I:129 [GLN] | A:2217 [C] | 4.31 | 57.31 | |||
| I:149 [GLY] | A:2216 [A] | 4.32 | 64.95 | |||
| I:149 [GLY] | A:2217 [C] | 2.76 | 64.95 | |||
| I:150 [HIS] | A:2216 [A] | 3.52 | 37.97 | |||
| I:150 [HIS] | A:2217 [C] | 4.19 | 37.97 | |||
| I:151 [ASN] | A:2216 [A] | 4.89 | 90.2 | |||
| I:151 [ASN] | A:2217 [C] | 4.23 | 90.2 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group77 | 7OF0_I_A | I: 39s ribosomal protein l10, mitochondrial, Homo sapiens (natural) A: 16s ribosomal RNA, Homo sapiens (natural) | Q7Z7H8 | Ribosomal protein L10-like | Bacterial large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 2
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4YBB_DI_DA | 7OF0_I_A | 0.32 | 0.94 | 4.04 | 0.05 | Ribosomal protein L10-like | Bacterial large subunit ribosomal RNA | compare |
| 4V9F_G_0 | 7OF0_I_A | 0.35 | 0.92 | 5.66 | 0.05 | Ribosomal protein L10-like | compare |