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All interfaces > All interologs > Interface groups > group78 > 4Y4O_16_1A

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Licorice
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RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_16
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
16:2 [ALA] 1A:2295 [C] 3.64 1A:2337 [G] 51.87
16:2 [ALA] 1A:2296 [C] 2.97 1A:2396 [G] 51.87
16:3 [SER] 1A:2295 [C] 4.45 1A:2337 [G] 62.07
16:3 [SER] 1A:2296 [C] 2.66 1A:2396 [G] 62.07
16:5 [VAL] 1A:2296 [C] 4.04 1A:2396 [G] 10.75
16:6 [ARG] 1A:2296 [C] 3.45 1A:2396 [G] 75.44
16:6 [ARG] 1A:2297 [C] 2.4 1A:2395 [G] base/AA stacks 75.44
16:6 [ARG] 1A:2298 [A] 4.09 75.44
16:6 [ARG] 1A:2358 [A] 4.61 75.44
16:8 [LYS] 1A:2432 [C] 4.18 1A:2408 [G] 17.48
16:8 [LYS] 1A:2433 [G] 3.23 1A:2407 [C] 17.48
16:10 [LEU] 1A:2431 [U] 3.94 1A:2409 [G] 54.08
16:17 [LYS] 1A:2411 [G] 4.58 1A:2429 [C] 66.09
16:18 [ARG] 1A:2411 [G] 5.0 1A:2429 [C] 39.99
16:18 [ARG] 1A:2412 [G] 3.32 1A:2428 [C] 39.99
16:18 [ARG] 1A:2413 [U] 2.88 1A:2427 [G] 39.99
16:19 [ARG] 1A:2410 [U] 4.92 1A:2430 [A] 64.0
16:19 [ARG] 1A:2411 [G] 3.43 1A:2429 [C] 64.0
16:19 [ARG] 1A:2430 [A] 4.45 1A:2410 [U] 64.0
16:21 [TYR] 1A:2359 [C] 2.43 1A:2382 [G] sugar:SC 93.97
16:21 [TYR] 1A:2360 [U] 3.73 1A:2381 [A] 93.97
16:22 [ALA] 1A:2431 [U] 3.67 1A:2409 [G] 50.24
16:23 [THR] 1A:2298 [A] 2.89 base:SC 83.94
16:23 [THR] 1A:2358 [A] 3.65 83.94
16:24 [GLU] 1A:2296 [C] 3.68 1A:2396 [G] 20.97
16:24 [GLU] 1A:2297 [C] 2.97 1A:2395 [G] base:SC 20.97
16:24 [GLU] 1A:2298 [A] 2.85 base:BB 20.97
16:24 [GLU] 1A:2358 [A] 4.36 20.97
16:25 [LYS] 1A:2298 [A] 3.63 74.58
16:26 [ASN] 1A:2296 [C] 4.62 1A:2396 [G] 84.99
16:26 [ASN] 1A:2297 [C] 2.8 1A:2395 [G] 84.99
16:26 [ASN] 1A:2298 [A] 3.66 84.99
16:29 [ASN] 1A:2297 [C] 3.01 1A:2395 [G] 62.28
16:29 [ASN] 1A:2298 [A] 2.97 62.28
16:30 [THR] 1A:2298 [A] 3.7 43.68
16:34 [LEU] 1A:2298 [A] 3.56 65.09
16:36 [LEU] 1A:2298 [A] 3.78 53.29
16:36 [LEU] 1A:2356 [U] 3.44 1A:2299 [A] 53.29
16:37 [ARG] 1A:2356 [U] 2.85 1A:2299 [A] sugar:BB 63.25
16:37 [ARG] 1A:2357 [G] 3.84 1A:2383 [G] 63.25
16:37 [ARG] 1A:2384 [G] 3.84 1A:2393 [C] 63.25
16:37 [ARG] 1A:2385 [G] 4.71 1A:2392 [C] 63.25
16:38 [LYS] 1A:2356 [U] 4.06 1A:2299 [A] 99.0
16:38 [LYS] 1A:2357 [G] 2.72 1A:2383 [G] 99.0
16:38 [LYS] 1A:2358 [A] 4.28 99.0
16:38 [LYS] 1A:2359 [C] 2.75 1A:2382 [G] 99.0
16:39 [TYR] 1A:2357 [G] 4.64 1A:2383 [G] 57.93
16:39 [TYR] 1A:2359 [C] 4.09 1A:2382 [G] 57.93
16:39 [TYR] 1A:2360 [U] 3.7 1A:2381 [A] 57.93
16:39 [TYR] 1A:2382 [G] 2.84 1A:2359 [C] sugar:SC 57.93
16:39 [TYR] 1A:2383 [G] 3.46 1A:2357 [G] 57.93
16:41 [PRO] 1A:668 [A] 4.41 38.8
16:41 [PRO] 1A:2360 [U] 3.63 1A:2381 [A] 38.8
16:42 [TRP] 1A:2412 [G] 3.63 1A:2428 [C] 1.39
16:42 [TRP] 1A:2413 [U] 3.8 1A:2427 [G] 1.39
16:44 [ARG] 1A:668 [A] 3.37 base/AA stacks 55.78
16:44 [ARG] 1A:2382 [G] 3.21 1A:2359 [C] sugar:SC 55.78
16:44 [ARG] 1A:2383 [G] 3.7 1A:2357 [G] 55.78
16:45 [LYS] 1A:2383 [G] 3.45 1A:2357 [G] 46.93
16:46 [HIS] 1A:2357 [G] 3.27 1A:2383 [G] 74.99
16:46 [HIS] 1A:2359 [C] 4.98 1A:2382 [G] 74.99
16:46 [HIS] 1A:2383 [G] 2.85 1A:2357 [G] sugar:BB, sugar:SC 74.99
16:46 [HIS] 1A:2384 [G] 3.53 1A:2393 [C] 74.99
16:54 [ILE] 1A:2409 [G] 4.49 1A:2431 [U] 40.57
16:54 [ILE] 1A:2431 [U] 3.26 1A:2409 [G] 40.57
16:54 [ILE] 1A:2432 [C] 3.52 1A:2408 [G] 40.57

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group78 4Y4O_16_1A 16: 50s ribosomal protein l33, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) P35871 Rubredoxin-related Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_16_1A 7RYG_0_A 0.80 0.96 2.89 0.39 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_16_1A 7OF0_1_A 0.47 0.96 2.56 0.22 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_16_1A 7K00_0_a 0.78 0.96 1.51 0.52 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_16_1A 6S0Z_1_A 0.76 0.96 2.31 0.44 Rubredoxin-related Bacterial large subunit ribosomal RNA compare