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All interfaces > All interologs > Interface groups > group78 > 4Y4O_16_1A vs 6S0Z_1_A

Interface analysis


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Common contacts -

4Y4O_16
4Y4O_1A
6S0Z_1
6S0Z_A
Conserved?
16:19 [ARG] 1A:2430 [A] 1:15 [ARG] A:2445 [A] ✔
16:45 [LYS] 1A:2383 [G] 1:41 [LYS] A:2398 [G] ✔
16:36 [LEU] 1A:2298 [A] 1:32 [MET] A:2313 [A] ✔
16:36 [LEU] 1A:2356 [U] 1:32 [MET] A:2371 [U] ✔
16:34 [LEU] 1A:2298 [A] 1:30 [ILE] A:2313 [A] ✔
16:30 [THR] 1A:2298 [A] 1:26 [ASN] A:2313 [A] ✔
16:29 [ASN] 1A:2297 [C] 1:25 [ASN] A:2312 [C] ✔
16:29 [ASN] 1A:2298 [A] 1:25 [ASN] A:2313 [A] ✔
16:8 [LYS] 1A:2432 [C] 1:4 [ASN] A:2447 [C] ✔
16:10 [LEU] 1A:2431 [U] 1:6 [THR] A:2446 [U] ✔
16:23 [THR] 1A:2298 [A] 1:19 [THR] A:2313 [A] ✔
16:23 [THR] 1A:2358 [A] 1:19 [THR] A:2373 [A] ✔
16:37 [ARG] 1A:2356 [U] 1:33 [LYS] A:2371 [U] ✔
16:37 [ARG] 1A:2357 [G] 1:33 [LYS] A:2372 [G] ✔
16:26 [ASN] 1A:2297 [C] 1:22 [ASN] A:2312 [C] ✔
16:26 [ASN] 1A:2298 [A] 1:22 [ASN] A:2313 [A] ✔
16:39 [TYR] 1A:2359 [C] 1:35 [TYR] A:2374 [C] ✔
16:39 [TYR] 1A:2360 [U] 1:35 [TYR] A:2375 [U] ✔
16:39 [TYR] 1A:2382 [G] 1:35 [TYR] A:2397 [G] ✔
16:39 [TYR] 1A:2383 [G] 1:35 [TYR] A:2398 [G] ✔
16:46 [HIS] 1A:2357 [G] 1:42 [TYR] A:2372 [G] ✔
16:46 [HIS] 1A:2359 [C] 1:42 [TYR] A:2374 [C] ✔
16:46 [HIS] 1A:2383 [G] 1:42 [TYR] A:2398 [G] ✔
16:46 [HIS] 1A:2384 [G] 1:42 [TYR] A:2399 [G] ✔
16:41 [PRO] 1A:668 [A] 1:37 [PRO] A:688 [A] ✔
16:41 [PRO] 1A:2360 [U] 1:37 [PRO] A:2375 [U] ✔
16:24 [GLU] 1A:2297 [C] 1:20 [THR] A:2312 [C] ✔
16:24 [GLU] 1A:2298 [A] 1:20 [THR] A:2313 [A] ✔
16:24 [GLU] 1A:2358 [A] 1:20 [THR] A:2373 [A] ✔
16:6 [ARG] 1A:2296 [C] 1:2 [ARG] A:2311 [U] ✔
16:6 [ARG] 1A:2297 [C] 1:2 [ARG] A:2312 [C] ✔
16:6 [ARG] 1A:2298 [A] 1:2 [ARG] A:2313 [A] ✔
16:38 [LYS] 1A:2356 [U] 1:34 [LYS] A:2371 [U] ✔
16:38 [LYS] 1A:2357 [G] 1:34 [LYS] A:2372 [G] ✔
16:38 [LYS] 1A:2358 [A] 1:34 [LYS] A:2373 [A] ✔
16:38 [LYS] 1A:2359 [C] 1:34 [LYS] A:2374 [C] ✔
16:21 [TYR] 1A:2359 [C] 1:17 [TYR] A:2374 [C] ✔
16:21 [TYR] 1A:2360 [U] 1:17 [TYR] A:2375 [U] ✔
16:22 [ALA] 1A:2431 [U] 1:18 [ILE] A:2446 [U] ✔
16:25 [LYS] 1A:2298 [A] 1:21 [LYS] A:2313 [A] ✔
16:42 [TRP] 1A:2412 [G] 1:38 [ARG] A:2427 [G] ✔
16:42 [TRP] 1A:2413 [U] 1:38 [ARG] A:2428 [U] ✔
16:44 [ARG] 1A:2382 [G] 1:40 [ASN] A:2397 [G] ✔
16:44 [ARG] 1A:2383 [G] 1:40 [ASN] A:2398 [G] ✔
16:37 [ARG] 1A:2384 [G] 1:33 [LYS] A:2399 [G] ❌ 6S0Z_1_A
16:26 [ASN] 1A:2296 [C] 1:22 [ASN] A:2311 [U] ❌ 6S0Z_1_A
16:39 [TYR] 1A:2357 [G] 1:35 [TYR] A:2372 [G] ❌ 6S0Z_1_A
16:24 [GLU] 1A:2296 [C] 1:20 [THR] A:2311 [U] ❌ 6S0Z_1_A
16:6 [ARG] 1A:2358 [A] 1:2 [ARG] A:2373 [A] ❌ 6S0Z_1_A
16:44 [ARG] 1A:668 [A] 1:40 [ASN] A:688 [A] ❌ 6S0Z_1_A
16:22 [ALA] 1A:2432 [C] 1:18 [ILE] A:2447 [C] ❌ 4Y4O_16_1A
16:19 [ARG] 1A:2410 [U] 1:15 [ARG] A:2425 [U] ❌ 6S0Z_A:2425 no longer at interface
16:19 [ARG] 1A:2411 [G] 1:15 [ARG] A:2426 [G] ❌ 6S0Z_A:2426 no longer at interface
16:8 [LYS] 1A:2433 [G] 1:4 [ASN] A:2448 [G] ❌ 6S0Z_A:2448 no longer at interface
16:18 [ARG] 1A:2411 [G] 1:14 [ASP] A:2426 [G] ❌ 6S0Z_1:14, 6S0Z_A:2426 no longer at interface
16:37 [ARG] 1A:2385 [G] 1:33 [LYS] A:2400 [U] ❌ 6S0Z_A:2400 no longer at interface
16:24 [GLU] 1A:2395 [G] 1:20 [THR] A:2410 [G] ❌ 4Y4O_1A:2395 no longer at interface
16:30 [THR] 1A:2299 [A] 1:26 [ASN] A:2314 [A] ❌ 4Y4O_1A:2299 no longer at interface
16:18 [ARG] 1A:2412 [G] 1:14 [ASP] A:2427 [G] ❌ 6S0Z_1:14 no longer at interface
16:18 [ARG] 1A:2413 [U] 1:14 [ASP] A:2428 [U] ❌ 6S0Z_1:14 no longer at interface
16:16 [CYS] 1A:2412 [G] 1:13 [GLY] A:2427 [G] ❌ 4Y4O_16:16 no longer at interface
16:20 [ASN] 1A:2430 [A] 1:16 [ASN] A:2445 [A] ❌ 4Y4O_16:20 no longer at interface
16:28 [ARG] 1A:2297 [C] 1:24 [ARG] A:2312 [C] ❌ 4Y4O_16:28 no longer at interface
16:28 [ARG] 1A:2296 [C] 1:24 [ARG] A:2311 [U] ❌ 4Y4O_16:28 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Rubredoxin-related Bacterial large subunit ribosomal RNA 0.96 2.31 0.44 0.86 0.97 0.88 0.89 0.76 0.53 0.27 0.65


Other pairs involving 4Y4O_16_1A or 6S0Z_1_A

Total number of entries: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0Z_1_A 7OF0_1_A 0.35 0.96 3.33 0.11 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
6S0Z_1_A 7RYG_0_A 0.78 0.98 1.58 0.4 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
6S0Z_1_A 7K00_0_a 0.80 0.97 2.55 0.36 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_16_1A 7OF0_1_A 0.47 0.96 2.56 0.22 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_16_1A 7K00_0_a 0.78 0.96 1.51 0.52 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_16_1A 7RYG_0_A 0.80 0.96 2.89 0.39 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_16_1A 6S0Z_1_A 0.76 0.96 2.31 0.44 Rubredoxin-related Bacterial large subunit ribosomal RNA compare