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All interfaces > All interologs > Interface groups > group78 > 4Y4O_16_1A vs 7K00_0_a

Interface analysis


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Licorice
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Common contacts -

4Y4O_16
4Y4O_1A
7K00_0
7K00_a
Conserved?
16:45 [LYS] 1A:2383 [G] 0:45 [GLN] a:2371 [G] ✔
16:36 [LEU] 1A:2298 [A] 0:36 [LEU] a:2286 [G] ✔
16:36 [LEU] 1A:2356 [U] 0:36 [LEU] a:2344 [U] ✔
16:34 [LEU] 1A:2298 [A] 0:34 [LEU] a:2286 [G] ✔
16:30 [THR] 1A:2298 [A] 0:30 [LYS] a:2286 [G] ✔
16:29 [ASN] 1A:2297 [C] 0:29 [THR] a:2285 [C] ✔
16:29 [ASN] 1A:2298 [A] 0:29 [THR] a:2286 [G] ✔
16:8 [LYS] 1A:2432 [C] 0:8 [LYS] a:2420 [C] ✔
16:8 [LYS] 1A:2433 [G] 0:8 [LYS] a:2421 [G] ✔
16:3 [SER] 1A:2295 [C] 0:4 [GLY] a:2283 [C] ✔
16:3 [SER] 1A:2296 [C] 0:4 [GLY] a:2284 [A] ✔
16:54 [ILE] 1A:2431 [U] 0:54 [ILE] a:2419 [U] ✔
16:54 [ILE] 1A:2432 [C] 0:54 [ILE] a:2420 [C] ✔
16:18 [ARG] 1A:2411 [G] 0:18 [GLY] a:2399 [G] ✔
16:23 [THR] 1A:2298 [A] 0:23 [THR] a:2286 [G] ✔
16:23 [THR] 1A:2358 [A] 0:23 [THR] a:2346 [A] ✔
16:37 [ARG] 1A:2356 [U] 0:37 [LYS] a:2344 [U] ✔
16:37 [ARG] 1A:2357 [G] 0:37 [LYS] a:2345 [G] ✔
16:26 [ASN] 1A:2296 [C] 0:26 [ASN] a:2284 [A] ✔
16:26 [ASN] 1A:2297 [C] 0:26 [ASN] a:2285 [C] ✔
16:39 [TYR] 1A:2357 [G] 0:39 [PHE] a:2345 [G] ✔
16:39 [TYR] 1A:2359 [C] 0:39 [PHE] a:2347 [C] ✔
16:39 [TYR] 1A:2360 [U] 0:39 [PHE] a:2348 [U] ✔
16:39 [TYR] 1A:2382 [G] 0:39 [PHE] a:2370 [G] ✔
16:39 [TYR] 1A:2383 [G] 0:39 [PHE] a:2371 [G] ✔
16:46 [HIS] 1A:2357 [G] 0:46 [HIS] a:2345 [G] ✔
16:46 [HIS] 1A:2359 [C] 0:46 [HIS] a:2347 [C] ✔
16:46 [HIS] 1A:2383 [G] 0:46 [HIS] a:2371 [G] ✔
16:46 [HIS] 1A:2384 [G] 0:46 [HIS] a:2372 [U] ✔
16:41 [PRO] 1A:668 [A] 0:41 [PRO] a:643 [A] ✔
16:41 [PRO] 1A:2360 [U] 0:41 [PRO] a:2348 [U] ✔
16:24 [GLU] 1A:2297 [C] 0:24 [THR] a:2285 [C] ✔
16:24 [GLU] 1A:2298 [A] 0:24 [THR] a:2286 [G] ✔
16:6 [ARG] 1A:2296 [C] 0:6 [ARG] a:2284 [A] ✔
16:6 [ARG] 1A:2297 [C] 0:6 [ARG] a:2285 [C] ✔
16:6 [ARG] 1A:2298 [A] 0:6 [ARG] a:2286 [G] ✔
16:38 [LYS] 1A:2356 [U] 0:38 [LYS] a:2344 [U] ✔
16:38 [LYS] 1A:2357 [G] 0:38 [LYS] a:2345 [G] ✔
16:38 [LYS] 1A:2358 [A] 0:38 [LYS] a:2346 [A] ✔
16:38 [LYS] 1A:2359 [C] 0:38 [LYS] a:2347 [C] ✔
16:21 [TYR] 1A:2359 [C] 0:21 [TYR] a:2347 [C] ✔
16:21 [TYR] 1A:2360 [U] 0:21 [TYR] a:2348 [U] ✔
16:22 [ALA] 1A:2431 [U] 0:22 [THR] a:2419 [U] ✔
16:25 [LYS] 1A:2298 [A] 0:25 [LYS] a:2286 [G] ✔
16:44 [ARG] 1A:668 [A] 0:44 [ARG] a:643 [A] ✔
16:44 [ARG] 1A:2382 [G] 0:44 [ARG] a:2370 [G] ✔
16:44 [ARG] 1A:2383 [G] 0:44 [ARG] a:2371 [G] ✔
16:17 [LYS] 1A:2411 [G] 0:17 [THR] a:2399 [G] ❌ 7K00_0_a
16:18 [ARG] 1A:2412 [G] 0:18 [GLY] a:2400 [G] ❌ 7K00_0_a
16:37 [ARG] 1A:2384 [G] 0:37 [LYS] a:2372 [U] ❌ 7K00_0_a
16:26 [ASN] 1A:2298 [A] 0:26 [ASN] a:2286 [G] ❌ 7K00_0_a
16:24 [GLU] 1A:2296 [C] 0:24 [THR] a:2284 [A] ❌ 7K00_0_a
16:24 [GLU] 1A:2358 [A] 0:24 [THR] a:2346 [A] ❌ 7K00_0_a
16:6 [ARG] 1A:2358 [A] 0:6 [ARG] a:2346 [A] ❌ 7K00_0_a
16:17 [LYS] 1A:2412 [G] 0:17 [THR] a:2400 [G] ❌ 4Y4O_16_1A
16:30 [THR] 1A:2297 [C] 0:30 [LYS] a:2285 [C] ❌ 4Y4O_16_1A
16:45 [LYS] 1A:2384 [G] 0:45 [GLN] a:2372 [U] ❌ 4Y4O_16_1A
16:46 [HIS] 1A:2356 [U] 0:46 [HIS] a:2344 [U] ❌ 4Y4O_16_1A
16:19 [ARG] 1A:2410 [U] 0:19 [HIS] a:2398 [U] ❌ 7K00_0:19, 7K00_a:2398 no longer at interface
16:54 [ILE] 1A:2409 [G] 0:54 [ILE] a:2397 [G] ❌ 7K00_a:2397 no longer at interface
16:18 [ARG] 1A:2413 [U] 0:18 [GLY] a:2401 [U] ❌ 7K00_a:2401 no longer at interface
16:37 [ARG] 1A:2385 [G] 0:37 [LYS] a:2373 [G] ❌ 7K00_a:2373 no longer at interface
16:42 [TRP] 1A:2413 [U] 0:42 [VAL] a:2401 [U] ❌ 7K00_0:42, 7K00_a:2401 no longer at interface
16:30 [THR] 1A:2299 [A] 0:30 [LYS] a:2287 [A] ❌ 4Y4O_1A:2299 no longer at interface
16:19 [ARG] 1A:2411 [G] 0:19 [HIS] a:2399 [G] ❌ 7K00_0:19 no longer at interface
16:19 [ARG] 1A:2430 [A] 0:19 [HIS] a:2418 [A] ❌ 7K00_0:19 no longer at interface
16:10 [LEU] 1A:2431 [U] 0:10 [LYS] a:2419 [U] ❌ 7K00_0:10 no longer at interface
16:42 [TRP] 1A:2412 [G] 0:42 [VAL] a:2400 [G] ❌ 7K00_0:42 no longer at interface
16:20 [ASN] 1A:2430 [A] 0:20 [PHE] a:2418 [A] ❌ 4Y4O_16:20 no longer at interface
16:20 [ASN] 1A:2411 [G] 0:20 [PHE] a:2399 [G] ❌ 4Y4O_16:20 no longer at interface
16:20 [ASN] 1A:2431 [U] 0:20 [PHE] a:2419 [U] ❌ 4Y4O_16:20 no longer at interface
16:4 [GLU] 1A:2295 [C] 0:5 [ILE] a:2283 [C] ❌ 4Y4O_16:4 no longer at interface
16:4 [GLU] 1A:2296 [C] 0:5 [ILE] a:2284 [A] ❌ 4Y4O_16:4 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Rubredoxin-related Bacterial large subunit ribosomal RNA 0.96 1.51 0.52 0.86 0.96 0.92 0.95 0.78 0.65 0.38 0.58


Other pairs involving 4Y4O_16_1A or 7K00_0_a

Total number of entries: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
7K00_0_a 7RYG_0_A 0.93 0.99 2.45 0.8 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
7K00_0_a 7OF0_1_A 0.33 0.93 2.77 0.24 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
6S0Z_1_A 7K00_0_a 0.80 0.97 2.55 0.36 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_16_1A 7OF0_1_A 0.47 0.96 2.56 0.22 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_16_1A 7K00_0_a 0.78 0.96 1.51 0.52 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_16_1A 7RYG_0_A 0.80 0.96 2.89 0.39 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_16_1A 6S0Z_1_A 0.76 0.96 2.31 0.44 Rubredoxin-related Bacterial large subunit ribosomal RNA compare