RNAprotDB

All interfaces > All interologs > Interface groups > group78 > 4Y4O_16_1A vs 7OF0_1_A

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

4Y4O_16
4Y4O_1A
7OF0_1
7OF0_A
Conserved?
16:36 [LEU] 1A:2356 [U] 1:43 [LEU] A:2852 [C] ✔
16:8 [LYS] 1A:2432 [C] 1:17 [LEU] A:2909 [G] ✔
16:54 [ILE] 1A:2431 [U] 1:62 [ILE] A:2908 [U] ✔
16:10 [LEU] 1A:2431 [U] 1:19 [ARG] A:2908 [U] ✔
16:37 [ARG] 1A:2356 [U] 1:44 [LEU] A:2852 [C] ✔
16:26 [ASN] 1A:2297 [C] 1:35 [ASN] A:2849 [G] ✔
16:39 [TYR] 1A:2357 [G] 1:46 [TYR] A:2853 [A] ✔
16:39 [TYR] 1A:2359 [C] 1:46 [TYR] A:2855 [G] ✔
16:46 [HIS] 1A:2357 [G] 1:53 [ARG] A:2853 [A] ✔
16:46 [HIS] 1A:2384 [G] 1:53 [ARG] A:2879 [A] ✔
16:24 [GLU] 1A:2296 [C] 1:33 [LYS] A:2848 [A] ✔
16:24 [GLU] 1A:2298 [A] 1:33 [LYS] A:2850 [U] ✔
16:6 [ARG] 1A:2296 [C] 1:15 [ASN] A:2848 [A] ✔
16:6 [ARG] 1A:2297 [C] 1:15 [ASN] A:2849 [G] ✔
16:38 [LYS] 1A:2356 [U] 1:45 [HIS] A:2852 [C] ✔
16:38 [LYS] 1A:2357 [G] 1:45 [HIS] A:2853 [A] ✔
16:38 [LYS] 1A:2359 [C] 1:45 [HIS] A:2855 [G] ✔
16:22 [ALA] 1A:2431 [U] 1:31 [ASN] A:2908 [U] ✔
16:44 [ARG] 1A:2382 [G] 1:51 [LYS] A:2878 [G] ✔
16:19 [ARG] 1A:2410 [U] 1:29 [CYS] A:2903 [U] ❌ 7OF0_1_A
16:19 [ARG] 1A:2430 [A] 1:29 [CYS] A:2907 [U] ❌ 7OF0_1_A
16:36 [LEU] 1A:2298 [A] 1:43 [LEU] A:2850 [U] ❌ 7OF0_1_A
16:8 [LYS] 1A:2433 [G] 1:17 [LEU] A:2910 [A] ❌ 7OF0_1_A
16:54 [ILE] 1A:2432 [C] 1:62 [ILE] A:2909 [G] ❌ 7OF0_1_A
16:23 [THR] 1A:2298 [A] 1:32 [THR] A:2850 [U] ❌ 7OF0_1_A
16:37 [ARG] 1A:2357 [G] 1:44 [LEU] A:2853 [A] ❌ 7OF0_1_A
16:37 [ARG] 1A:2384 [G] 1:44 [LEU] A:2879 [A] ❌ 7OF0_1_A
16:37 [ARG] 1A:2385 [G] 1:44 [LEU] A:2880 [A] ❌ 7OF0_1_A
16:26 [ASN] 1A:2296 [C] 1:35 [ASN] A:2848 [A] ❌ 7OF0_1_A
16:26 [ASN] 1A:2298 [A] 1:35 [ASN] A:2850 [U] ❌ 7OF0_1_A
16:39 [TYR] 1A:2382 [G] 1:46 [TYR] A:2878 [G] ❌ 7OF0_1_A
16:46 [HIS] 1A:2359 [C] 1:53 [ARG] A:2855 [G] ❌ 7OF0_1_A
16:24 [GLU] 1A:2297 [C] 1:33 [LYS] A:2849 [G] ❌ 7OF0_1_A
16:6 [ARG] 1A:2298 [A] 1:15 [ASN] A:2850 [U] ❌ 7OF0_1_A
16:6 [ARG] 1A:2295 [C] 1:15 [ASN] A:2847 [C] ❌ 4Y4O_16_1A
16:8 [LYS] 1A:2431 [U] 1:17 [LEU] A:2908 [U] ❌ 4Y4O_16_1A
16:10 [LEU] 1A:2410 [U] 1:19 [ARG] A:2903 [U] ❌ 4Y4O_16_1A
16:10 [LEU] 1A:2430 [A] 1:19 [ARG] A:2907 [U] ❌ 4Y4O_16_1A
16:22 [ALA] 1A:2430 [A] 1:31 [ASN] A:2907 [U] ❌ 4Y4O_16_1A
16:23 [THR] 1A:2356 [U] 1:32 [THR] A:2852 [C] ❌ 4Y4O_16_1A
16:24 [GLU] 1A:2356 [U] 1:33 [LYS] A:2852 [C] ❌ 4Y4O_16_1A
16:39 [TYR] 1A:2356 [U] 1:46 [TYR] A:2852 [C] ❌ 4Y4O_16_1A
16:44 [ARG] 1A:2357 [G] 1:51 [LYS] A:2853 [A] ❌ 4Y4O_16_1A
16:44 [ARG] 1A:2384 [G] 1:51 [LYS] A:2879 [A] ❌ 4Y4O_16_1A
16:46 [HIS] 1A:2385 [G] 1:53 [ARG] A:2880 [A] ❌ 4Y4O_16_1A
16:54 [ILE] 1A:2409 [G] 1:62 [ILE] A:2902 [A] ❌ 7OF0_A:2902 no longer at interface
16:23 [THR] 1A:2358 [A] 1:32 [THR] A:2854 [U] ❌ 7OF0_A:2854 no longer at interface
16:24 [GLU] 1A:2358 [A] 1:33 [LYS] A:2854 [U] ❌ 7OF0_A:2854 no longer at interface
16:6 [ARG] 1A:2358 [A] 1:15 [ASN] A:2854 [U] ❌ 7OF0_A:2854 no longer at interface
16:38 [LYS] 1A:2358 [A] 1:45 [HIS] A:2854 [U] ❌ 7OF0_A:2854 no longer at interface
16:10 [LEU] 1A:2429 [C] 1:19 [ARG] A:2906 [C] ❌ 4Y4O_1A:2429 no longer at interface
16:10 [LEU] 1A:2428 [C] 1:19 [ARG] A:2905 [A] ❌ 4Y4O_1A:2428 no longer at interface
16:19 [ARG] 1A:2429 [C] 1:29 [CYS] A:2906 [C] ❌ 4Y4O_1A:2429 no longer at interface
16:19 [ARG] 1A:2428 [C] 1:29 [CYS] A:2905 [A] ❌ 4Y4O_1A:2428 no longer at interface
16:52 [VAL] 1A:2428 [C] 1:59 [LYS] A:2905 [A] ❌ 4Y4O_16:52, 4Y4O_1A:2428 no longer at interface
16:34 [LEU] 1A:2298 [A] 1:41 [LEU] A:2850 [U] ❌ 7OF0_1:41 no longer at interface
16:18 [ARG] 1A:2412 [G] 1:28 [PHE] A:2904 [A] ❌ 7OF0_1:28 no longer at interface
16:5 [VAL] 1A:2296 [C] 1:14 [LYS] A:2848 [A] ❌ 7OF0_1:14 no longer at interface
16:25 [LYS] 1A:2298 [A] 1:34 [ARG] A:2850 [U] ❌ 7OF0_1:34 no longer at interface
16:42 [TRP] 1A:2412 [G] 1:49 [VAL] A:2904 [A] ❌ 7OF0_1:49 no longer at interface
16:20 [ASN] 1A:2356 [U] 1:30 [PHE] A:2852 [C] ❌ 4Y4O_16:20 no longer at interface
16:31 [PRO] 1A:2298 [A] 1:38 [ARG] A:2850 [U] ❌ 4Y4O_16:31 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Rubredoxin-related Bacterial large subunit ribosomal RNA 0.96 2.56 0.22 0.74 0.97 0.71 0.89 0.47 0.22 0.11 0.40


Other pairs involving 4Y4O_16_1A or 7OF0_1_A

Total number of entries: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_16_1A 6S0Z_1_A 0.76 0.96 2.31 0.44 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_16_1A 7K00_0_a 0.78 0.96 1.51 0.52 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
7K00_0_a 7OF0_1_A 0.33 0.93 2.77 0.24 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
6S0Z_1_A 7OF0_1_A 0.35 0.96 3.33 0.11 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_16_1A 7OF0_1_A 0.47 0.96 2.56 0.22 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
7OF0_1_A 7RYG_0_A 0.55 0.93 3.29 0.19 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_16_1A 7RYG_0_A 0.80 0.96 2.89 0.39 Rubredoxin-related Bacterial large subunit ribosomal RNA compare