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All interfaces > All interologs > Interface groups > group78 > 4Y4O_16_1A vs 7RYG_0_A

Interface analysis


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Common contacts -

4Y4O_16
4Y4O_1A
7RYG_0
7RYG_A
Conserved?
16:45 [LYS] 1A:2383 [G] 0:41 [GLN] A:2367 [G] ✔
16:36 [LEU] 1A:2298 [A] 0:32 [ILE] A:2282 [G] ✔
16:36 [LEU] 1A:2356 [U] 0:32 [ILE] A:2340 [U] ✔
16:34 [LEU] 1A:2298 [A] 0:30 [MET] A:2282 [G] ✔
16:30 [THR] 1A:2298 [A] 0:26 [MET] A:2282 [G] ✔
16:29 [ASN] 1A:2297 [C] 0:25 [THR] A:2281 [C] ✔
16:29 [ASN] 1A:2298 [A] 0:25 [THR] A:2282 [G] ✔
16:8 [LYS] 1A:2432 [C] 0:4 [LYS] A:2416 [C] ✔
16:8 [LYS] 1A:2433 [G] 0:4 [LYS] A:2417 [G] ✔
16:54 [ILE] 1A:2431 [U] 0:50 [ILE] A:2415 [U] ✔
16:54 [ILE] 1A:2432 [C] 0:50 [ILE] A:2416 [C] ✔
16:10 [LEU] 1A:2431 [U] 0:6 [ARG] A:2415 [U] ✔
16:18 [ARG] 1A:2411 [G] 0:14 [GLY] A:2395 [G] ✔
16:18 [ARG] 1A:2412 [G] 0:14 [GLY] A:2396 [G] ✔
16:23 [THR] 1A:2298 [A] 0:19 [THR] A:2282 [G] ✔
16:23 [THR] 1A:2358 [A] 0:19 [THR] A:2342 [A] ✔
16:37 [ARG] 1A:2356 [U] 0:33 [LYS] A:2340 [U] ✔
16:37 [ARG] 1A:2357 [G] 0:33 [LYS] A:2341 [A] ✔
16:26 [ASN] 1A:2296 [C] 0:22 [ASN] A:2280 [A] ✔
16:26 [ASN] 1A:2297 [C] 0:22 [ASN] A:2281 [C] ✔
16:26 [ASN] 1A:2298 [A] 0:22 [ASN] A:2282 [G] ✔
16:39 [TYR] 1A:2357 [G] 0:35 [PHE] A:2341 [A] ✔
16:39 [TYR] 1A:2359 [C] 0:35 [PHE] A:2343 [C] ✔
16:39 [TYR] 1A:2360 [U] 0:35 [PHE] A:2344 [U] ✔
16:39 [TYR] 1A:2382 [G] 0:35 [PHE] A:2366 [G] ✔
16:39 [TYR] 1A:2383 [G] 0:35 [PHE] A:2367 [G] ✔
16:46 [HIS] 1A:2357 [G] 0:42 [HIS] A:2341 [A] ✔
16:46 [HIS] 1A:2383 [G] 0:42 [HIS] A:2367 [G] ✔
16:46 [HIS] 1A:2384 [G] 0:42 [HIS] A:2368 [U] ✔
16:41 [PRO] 1A:2360 [U] 0:37 [PRO] A:2344 [U] ✔
16:24 [GLU] 1A:2297 [C] 0:20 [THR] A:2281 [C] ✔
16:24 [GLU] 1A:2298 [A] 0:20 [THR] A:2282 [G] ✔
16:6 [ARG] 1A:2296 [C] 0:2 [ARG] A:2280 [A] ✔
16:6 [ARG] 1A:2297 [C] 0:2 [ARG] A:2281 [C] ✔
16:6 [ARG] 1A:2298 [A] 0:2 [ARG] A:2282 [G] ✔
16:38 [LYS] 1A:2356 [U] 0:34 [LYS] A:2340 [U] ✔
16:38 [LYS] 1A:2357 [G] 0:34 [LYS] A:2341 [A] ✔
16:38 [LYS] 1A:2358 [A] 0:34 [LYS] A:2342 [A] ✔
16:38 [LYS] 1A:2359 [C] 0:34 [LYS] A:2343 [C] ✔
16:21 [TYR] 1A:2359 [C] 0:17 [TYR] A:2343 [C] ✔
16:21 [TYR] 1A:2360 [U] 0:17 [TYR] A:2344 [U] ✔
16:22 [ALA] 1A:2431 [U] 0:18 [THR] A:2415 [U] ✔
16:5 [VAL] 1A:2296 [C] 0:1 [MET] A:2280 [A] ✔
16:25 [LYS] 1A:2298 [A] 0:21 [LYS] A:2282 [G] ✔
16:42 [TRP] 1A:2412 [G] 0:38 [LYS] A:2396 [G] ✔
16:44 [ARG] 1A:668 [A] 0:40 [ARG] A:641 [A] ✔
16:44 [ARG] 1A:2382 [G] 0:40 [ARG] A:2366 [G] ✔
16:44 [ARG] 1A:2383 [G] 0:40 [ARG] A:2367 [G] ✔
16:19 [ARG] 1A:2410 [U] 0:15 [TYR] A:2394 [U] ❌ 7RYG_0_A
16:19 [ARG] 1A:2411 [G] 0:15 [TYR] A:2395 [G] ❌ 7RYG_0_A
16:19 [ARG] 1A:2430 [A] 0:15 [TYR] A:2414 [A] ❌ 7RYG_0_A
16:17 [LYS] 1A:2411 [G] 0:13 [THR] A:2395 [G] ❌ 7RYG_0_A
16:54 [ILE] 1A:2409 [G] 0:50 [ILE] A:2393 [G] ❌ 7RYG_0_A
16:37 [ARG] 1A:2384 [G] 0:33 [LYS] A:2368 [U] ❌ 7RYG_0_A
16:46 [HIS] 1A:2359 [C] 0:42 [HIS] A:2343 [C] ❌ 7RYG_0_A
16:41 [PRO] 1A:668 [A] 0:37 [PRO] A:641 [A] ❌ 7RYG_0_A
16:24 [GLU] 1A:2296 [C] 0:20 [THR] A:2280 [A] ❌ 7RYG_0_A
16:24 [GLU] 1A:2358 [A] 0:20 [THR] A:2342 [A] ❌ 7RYG_0_A
16:6 [ARG] 1A:2358 [A] 0:2 [ARG] A:2342 [A] ❌ 7RYG_0_A
16:17 [LYS] 1A:2412 [G] 0:13 [THR] A:2396 [G] ❌ 4Y4O_16_1A
16:19 [ARG] 1A:2360 [U] 0:15 [TYR] A:2344 [U] ❌ 4Y4O_16_1A
16:22 [ALA] 1A:2432 [C] 0:18 [THR] A:2416 [C] ❌ 4Y4O_16_1A
16:10 [LEU] 1A:2410 [U] 0:6 [ARG] A:2394 [U] ❌ 4Y4O_16_1A
16:10 [LEU] 1A:2430 [A] 0:6 [ARG] A:2414 [A] ❌ 4Y4O_16_1A
16:10 [LEU] 1A:2411 [G] 0:6 [ARG] A:2395 [G] ❌ 4Y4O_16_1A
16:18 [ARG] 1A:2413 [U] 0:14 [GLY] A:2397 [U] ❌ 7RYG_A:2397 no longer at interface
16:37 [ARG] 1A:2385 [G] 0:33 [LYS] A:2369 [A] ❌ 7RYG_A:2369 no longer at interface
16:42 [TRP] 1A:2413 [U] 0:38 [LYS] A:2397 [U] ❌ 7RYG_A:2397 no longer at interface
16:20 [ASN] 1A:2431 [U] 0:16 [PHE] A:2415 [U] ❌ 4Y4O_16:20 no longer at interface
16:20 [ASN] 1A:2430 [A] 0:16 [PHE] A:2414 [A] ❌ 4Y4O_16:20 no longer at interface
16:20 [ASN] 1A:2411 [G] 0:16 [PHE] A:2395 [G] ❌ 4Y4O_16:20 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Rubredoxin-related Bacterial large subunit ribosomal RNA 0.96 2.89 0.39 0.85 0.96 0.93 1.0 0.80 0.59 0.38 0.26


Other pairs involving 4Y4O_16_1A or 7RYG_0_A

Total number of entries: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_16_1A 6S0Z_1_A 0.76 0.96 2.31 0.44 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_16_1A 7K00_0_a 0.78 0.96 1.51 0.52 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_16_1A 7OF0_1_A 0.47 0.96 2.56 0.22 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
7K00_0_a 7RYG_0_A 0.93 0.99 2.45 0.8 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
6S0Z_1_A 7RYG_0_A 0.78 0.98 1.58 0.4 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
7OF0_1_A 7RYG_0_A 0.55 0.93 3.29 0.19 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_16_1A 7RYG_0_A 0.80 0.96 2.89 0.39 Rubredoxin-related Bacterial large subunit ribosomal RNA compare