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All interfaces > All interologs > Interface groups > group78 > 6S0Z_1_A

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Licorice
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RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6S0Z_1
6S0Z_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1:2 [ARG] A:2311 [U] 3.24 A:2411 [A] 77.68
1:2 [ARG] A:2312 [C] 2.64 A:2410 [G] base/AA stacks 77.68
1:2 [ARG] A:2313 [A] 4.15 77.68
1:4 [ASN] A:2447 [C] 4.17 A:2423 [G] 14.1
1:6 [THR] A:2446 [U] 4.8 A:2424 [G] 43.84
1:13 [GLY] A:2427 [G] 4.72 A:2443 [C] 50.79
1:15 [ARG] A:2445 [A] 3.71 A:2425 [U] sugar:BB 60.48
1:16 [ASN] A:2445 [A] 3.05 A:2425 [U] 83.16
1:17 [TYR] A:2374 [C] 2.07 A:2397 [G] sugar:SC 90.3
1:17 [TYR] A:2375 [U] 3.6 A:2396 [A] 90.3
1:18 [ILE] A:2446 [U] 4.03 A:2424 [G] 44.33
1:18 [ILE] A:2447 [C] 4.44 A:2423 [G] 44.33
1:19 [THR] A:2313 [A] 3.68 75.96
1:19 [THR] A:2373 [A] 4.84 A:2314 [A] 75.96
1:20 [THR] A:2312 [C] 4.21 A:2410 [G] 32.23
1:20 [THR] A:2313 [A] 3.44 32.23
1:20 [THR] A:2373 [A] 3.84 A:2314 [A] 32.23
1:20 [THR] A:2410 [G] 4.9 A:2312 [C] 32.23
1:21 [LYS] A:2313 [A] 4.61 83.31
1:22 [ASN] A:2312 [C] 3.13 A:2410 [G] 87.39
1:22 [ASN] A:2313 [A] 2.8 87.39
1:24 [ARG] A:2311 [U] 4.98 A:2411 [A] 35.89
1:24 [ARG] A:2312 [C] 4.0 A:2410 [G] 35.89
1:25 [ASN] A:2312 [C] 3.56 A:2410 [G] 62.73
1:25 [ASN] A:2313 [A] 3.51 62.73
1:26 [ASN] A:2313 [A] 3.44 37.9
1:26 [ASN] A:2314 [A] 4.84 A:2373 [A] 37.9
1:30 [ILE] A:2313 [A] 4.9 59.36
1:32 [MET] A:2313 [A] 3.7 51.41
1:32 [MET] A:2371 [U] 3.19 51.41
1:33 [LYS] A:2371 [U] 3.55 60.5
1:33 [LYS] A:2372 [G] 3.5 A:2398 [G] 60.5
1:34 [LYS] A:2371 [U] 3.44 99.0
1:34 [LYS] A:2372 [G] 2.3 A:2398 [G] 99.0
1:34 [LYS] A:2373 [A] 4.92 A:2314 [A] 99.0
1:34 [LYS] A:2374 [C] 4.14 A:2397 [G] 99.0
1:35 [TYR] A:2374 [C] 3.66 A:2397 [G] 60.54
1:35 [TYR] A:2375 [U] 4.05 A:2396 [A] 60.54
1:35 [TYR] A:2397 [G] 3.36 A:2374 [C] 60.54
1:35 [TYR] A:2398 [G] 3.42 A:2372 [G] 60.54
1:37 [PRO] A:688 [A] 4.93 47.48
1:37 [PRO] A:2375 [U] 3.66 A:2396 [A] 47.48
1:38 [ARG] A:2427 [G] 4.75 A:2443 [C] 24.78
1:38 [ARG] A:2428 [U] 4.24 A:2442 [G] 24.78
1:40 [ASN] A:2397 [G] 2.96 A:2374 [C] sugar:SC 66.21
1:40 [ASN] A:2398 [G] 3.89 A:2372 [G] 66.21
1:41 [LYS] A:2398 [G] 4.04 A:2372 [G] 59.52
1:42 [TYR] A:2372 [G] 3.82 A:2398 [G] 76.56
1:42 [TYR] A:2374 [C] 4.25 A:2397 [G] 76.56
1:42 [TYR] A:2398 [G] 2.81 A:2372 [G] base:SC 76.56
1:42 [TYR] A:2399 [G] 3.2 A:2408 [C] 76.56

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group78 6S0Z_1_A 1: 50s ribosomal protein l33, Staphylococcus aureus (natural) A: 23s ribosomal RNA, Staphylococcus aureus (natural) A0A077V2P0 Rubredoxin-related Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0Z_1_A 7OF0_1_A 0.35 0.96 3.33 0.11 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
6S0Z_1_A 7RYG_0_A 0.78 0.98 1.58 0.4 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
6S0Z_1_A 7K00_0_a 0.80 0.97 2.55 0.36 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_16_1A 6S0Z_1_A 0.76 0.96 2.31 0.44 Rubredoxin-related Bacterial large subunit ribosomal RNA compare