Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7K00_0
|
7K00_a
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| 0:4 [GLY] | a:2283 [C] | 4.12 | a:2325 [G] | 20.95 | ||
| 0:4 [GLY] | a:2284 [A] | 3.98 | a:2384 [U] | 20.95 | ||
| 0:5 [ILE] | a:2283 [C] | 4.98 | a:2325 [G] | 0.5 | ||
| 0:5 [ILE] | a:2284 [A] | 3.45 | a:2384 [U] | 0.5 | ||
| 0:6 [ARG] | a:2284 [A] | 3.21 | a:2384 [U] | 72.93 | ||
| 0:6 [ARG] | a:2285 [C] | 2.49 | a:2383 [G] | base/AA stacks | 72.93 | |
| 0:6 [ARG] | a:2286 [G] | 2.89 | 72.93 | |||
| 0:8 [LYS] | a:2420 [C] | 3.57 | a:2396 [G] | 2.39 | ||
| 0:8 [LYS] | a:2421 [G] | 3.11 | a:2395 [C] | 2.39 | ||
| 0:17 [THR] | a:2400 [G] | 4.67 | a:2416 [C] | 69.37 | ||
| 0:18 [GLY] | a:2399 [G] | 4.23 | a:2417 [C] | 53.64 | ||
| 0:20 [PHE] | a:2399 [G] | 4.9 | a:2417 [C] | 62.63 | ||
| 0:20 [PHE] | a:2418 [A] | 3.1 | a:2398 [U] | 62.63 | ||
| 0:20 [PHE] | a:2419 [U] | 3.32 | a:2397 [G] | 62.63 | ||
| 0:21 [TYR] | a:2347 [C] | 2.88 | a:2370 [G] | sugar:SC | 81.39 | |
| 0:21 [TYR] | a:2348 [U] | 3.78 | a:2369 [A] | 81.39 | ||
| 0:22 [THR] | a:2419 [U] | 3.75 | a:2397 [G] | 30.32 | ||
| 0:23 [THR] | a:2286 [G] | 2.79 | base:SC | 80.77 | ||
| 0:23 [THR] | a:2346 [A] | 3.97 | 80.77 | |||
| 0:24 [THR] | a:2285 [C] | 4.36 | a:2383 [G] | 33.79 | ||
| 0:24 [THR] | a:2286 [G] | 2.71 | base:BB | 33.79 | ||
| 0:25 [LYS] | a:2286 [G] | 3.73 | 89.22 | |||
| 0:26 [ASN] | a:2284 [A] | 4.76 | a:2384 [U] | 89.24 | ||
| 0:26 [ASN] | a:2285 [C] | 3.21 | a:2383 [G] | 89.24 | ||
| 0:29 [THR] | a:2285 [C] | 4.06 | a:2383 [G] | 61.47 | ||
| 0:29 [THR] | a:2286 [G] | 4.27 | 61.47 | |||
| 0:30 [LYS] | a:2285 [C] | 4.61 | a:2383 [G] | 46.36 | ||
| 0:30 [LYS] | a:2286 [G] | 2.72 | 46.36 | |||
| 0:30 [LYS] | a:2287 [A] | 3.29 | a:2344 [U] | 46.36 | ||
| 0:34 [LEU] | a:2286 [G] | 3.15 | 64.9 | |||
| 0:36 [LEU] | a:2286 [G] | 3.37 | 53.06 | |||
| 0:36 [LEU] | a:2344 [U] | 3.55 | a:2287 [A] | 53.06 | ||
| 0:37 [LYS] | a:2344 [U] | 2.94 | a:2287 [A] | sugar:BB | 69.48 | |
| 0:37 [LYS] | a:2345 [G] | 4.09 | a:2371 [G] | 69.48 | ||
| 0:38 [LYS] | a:2344 [U] | 3.53 | a:2287 [A] | 98.11 | ||
| 0:38 [LYS] | a:2345 [G] | 4.49 | a:2371 [G] | 98.11 | ||
| 0:38 [LYS] | a:2346 [A] | 3.18 | sugar:SC | 98.11 | ||
| 0:38 [LYS] | a:2347 [C] | 4.93 | a:2370 [G] | 98.11 | ||
| 0:39 [PHE] | a:2345 [G] | 4.51 | a:2371 [G] | 69.32 | ||
| 0:39 [PHE] | a:2347 [C] | 3.49 | a:2370 [G] | sugar:BB | 69.32 | |
| 0:39 [PHE] | a:2348 [U] | 3.55 | a:2369 [A] | 69.32 | ||
| 0:39 [PHE] | a:2370 [G] | 3.55 | a:2347 [C] | 69.32 | ||
| 0:39 [PHE] | a:2371 [G] | 3.69 | a:2345 [G] | 69.32 | ||
| 0:41 [PRO] | a:643 [A] | 4.38 | 70.04 | |||
| 0:41 [PRO] | a:2348 [U] | 3.56 | a:2369 [A] | 70.04 | ||
| 0:44 [ARG] | a:643 [A] | 3.18 | base/AA stacks | 60.46 | ||
| 0:44 [ARG] | a:2370 [G] | 2.83 | a:2347 [C] | sugar:SC | 60.46 | |
| 0:44 [ARG] | a:2371 [G] | 4.07 | a:2345 [G] | 60.46 | ||
| 0:45 [GLN] | a:2371 [G] | 3.97 | a:2345 [G] | 53.85 | ||
| 0:45 [GLN] | a:2372 [U] | 4.89 | a:2381 [A] | 53.85 | ||
| 0:46 [HIS] | a:2344 [U] | 4.7 | a:2287 [A] | 78.9 | ||
| 0:46 [HIS] | a:2345 [G] | 2.68 | a:2371 [G] | 78.9 | ||
| 0:46 [HIS] | a:2347 [C] | 4.29 | a:2370 [G] | 78.9 | ||
| 0:46 [HIS] | a:2371 [G] | 2.66 | a:2345 [G] | sugar:SC | 78.9 | |
| 0:46 [HIS] | a:2372 [U] | 3.3 | a:2381 [A] | 78.9 | ||
| 0:54 [ILE] | a:2419 [U] | 3.89 | a:2397 [G] | 47.01 | ||
| 0:54 [ILE] | a:2420 [C] | 3.85 | a:2396 [G] | 47.01 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group78 | 7K00_0_a | 0: 50s ribosomal protein l33, Escherichia coli (natural) a: 23s rRNA, Escherichia coli (natural) | P0A7N9 | Rubredoxin-related | Bacterial large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 4
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_16_1A | 7K00_0_a | 0.78 | 0.96 | 1.51 | 0.52 | Rubredoxin-related | Bacterial large subunit ribosomal RNA | compare |
| 6S0Z_1_A | 7K00_0_a | 0.80 | 0.97 | 2.55 | 0.36 | Rubredoxin-related | Bacterial large subunit ribosomal RNA | compare |
| 7K00_0_a | 7RYG_0_A | 0.93 | 0.99 | 2.45 | 0.8 | Rubredoxin-related | Bacterial large subunit ribosomal RNA | compare |
| 7K00_0_a | 7OF0_1_A | 0.33 | 0.93 | 2.77 | 0.24 | Rubredoxin-related | Bacterial large subunit ribosomal RNA | compare |