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All interfaces > All interologs > Interface groups > group78 > 7K00_0_a vs 7RYG_0_A

Interface analysis


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Licorice
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Licorice
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Common contacts -

7K00_0
7K00_a
7RYG_0
7RYG_A
Conserved?
0:18 [GLY] a:2399 [G] 0:14 [GLY] A:2395 [G] ✔
0:24 [THR] a:2285 [C] 0:20 [THR] A:2281 [C] ✔
0:24 [THR] a:2286 [G] 0:20 [THR] A:2282 [G] ✔
0:39 [PHE] a:2345 [G] 0:35 [PHE] A:2341 [A] ✔
0:39 [PHE] a:2347 [C] 0:35 [PHE] A:2343 [C] ✔
0:39 [PHE] a:2348 [U] 0:35 [PHE] A:2344 [U] ✔
0:39 [PHE] a:2370 [G] 0:35 [PHE] A:2366 [G] ✔
0:39 [PHE] a:2371 [G] 0:35 [PHE] A:2367 [G] ✔
0:36 [LEU] a:2286 [G] 0:32 [ILE] A:2282 [G] ✔
0:36 [LEU] a:2344 [U] 0:32 [ILE] A:2340 [U] ✔
0:34 [LEU] a:2286 [G] 0:30 [MET] A:2282 [G] ✔
0:5 [ILE] a:2284 [A] 0:1 [MET] A:2280 [A] ✔
0:20 [PHE] a:2399 [G] 0:16 [PHE] A:2395 [G] ✔
0:20 [PHE] a:2418 [A] 0:16 [PHE] A:2414 [A] ✔
0:20 [PHE] a:2419 [U] 0:16 [PHE] A:2415 [U] ✔
0:37 [LYS] a:2344 [U] 0:33 [LYS] A:2340 [U] ✔
0:37 [LYS] a:2345 [G] 0:33 [LYS] A:2341 [A] ✔
0:29 [THR] a:2285 [C] 0:25 [THR] A:2281 [C] ✔
0:29 [THR] a:2286 [G] 0:25 [THR] A:2282 [G] ✔
0:8 [LYS] a:2420 [C] 0:4 [LYS] A:2416 [C] ✔
0:8 [LYS] a:2421 [G] 0:4 [LYS] A:2417 [G] ✔
0:54 [ILE] a:2419 [U] 0:50 [ILE] A:2415 [U] ✔
0:54 [ILE] a:2420 [C] 0:50 [ILE] A:2416 [C] ✔
0:17 [THR] a:2400 [G] 0:13 [THR] A:2396 [G] ✔
0:22 [THR] a:2419 [U] 0:18 [THR] A:2415 [U] ✔
0:23 [THR] a:2286 [G] 0:19 [THR] A:2282 [G] ✔
0:23 [THR] a:2346 [A] 0:19 [THR] A:2342 [A] ✔
0:26 [ASN] a:2284 [A] 0:22 [ASN] A:2280 [A] ✔
0:26 [ASN] a:2285 [C] 0:22 [ASN] A:2281 [C] ✔
0:45 [GLN] a:2371 [G] 0:41 [GLN] A:2367 [G] ✔
0:46 [HIS] a:2345 [G] 0:42 [HIS] A:2341 [A] ✔
0:46 [HIS] a:2371 [G] 0:42 [HIS] A:2367 [G] ✔
0:46 [HIS] a:2372 [U] 0:42 [HIS] A:2368 [U] ✔
0:41 [PRO] a:2348 [U] 0:37 [PRO] A:2344 [U] ✔
0:30 [LYS] a:2286 [G] 0:26 [MET] A:2282 [G] ✔
0:6 [ARG] a:2284 [A] 0:2 [ARG] A:2280 [A] ✔
0:6 [ARG] a:2285 [C] 0:2 [ARG] A:2281 [C] ✔
0:6 [ARG] a:2286 [G] 0:2 [ARG] A:2282 [G] ✔
0:38 [LYS] a:2344 [U] 0:34 [LYS] A:2340 [U] ✔
0:38 [LYS] a:2345 [G] 0:34 [LYS] A:2341 [A] ✔
0:38 [LYS] a:2346 [A] 0:34 [LYS] A:2342 [A] ✔
0:38 [LYS] a:2347 [C] 0:34 [LYS] A:2343 [C] ✔
0:21 [TYR] a:2347 [C] 0:17 [TYR] A:2343 [C] ✔
0:21 [TYR] a:2348 [U] 0:17 [TYR] A:2344 [U] ✔
0:25 [LYS] a:2286 [G] 0:21 [LYS] A:2282 [G] ✔
0:44 [ARG] a:643 [A] 0:40 [ARG] A:641 [A] ✔
0:44 [ARG] a:2370 [G] 0:40 [ARG] A:2366 [G] ✔
0:44 [ARG] a:2371 [G] 0:40 [ARG] A:2367 [G] ✔
0:45 [GLN] a:2372 [U] 0:41 [GLN] A:2368 [U] ❌ 7RYG_0_A
0:46 [HIS] a:2344 [U] 0:42 [HIS] A:2340 [U] ❌ 7RYG_0_A
0:46 [HIS] a:2347 [C] 0:42 [HIS] A:2343 [C] ❌ 7RYG_0_A
0:41 [PRO] a:643 [A] 0:37 [PRO] A:641 [A] ❌ 7RYG_0_A
0:30 [LYS] a:2285 [C] 0:26 [MET] A:2281 [C] ❌ 7RYG_0_A
0:18 [GLY] a:2400 [G] 0:14 [GLY] A:2396 [G] ❌ 7K00_0_a
0:22 [THR] a:2420 [C] 0:18 [THR] A:2416 [C] ❌ 7K00_0_a
0:26 [ASN] a:2286 [G] 0:22 [ASN] A:2282 [G] ❌ 7K00_0_a
0:5 [ILE] a:2283 [C] 0:1 [MET] A:2279 [U] ❌ 7RYG_A:2279 no longer at interface
0:30 [LYS] a:2287 [A] 0:26 [MET] A:2283 [A] ❌ 7RYG_A:2283 no longer at interface
0:10 [LYS] a:2398 [U] 0:6 [ARG] A:2394 [U] ❌ 7K00_0:10, 7K00_a:2398 no longer at interface
0:19 [HIS] a:2348 [U] 0:15 [TYR] A:2344 [U] ❌ 7K00_0:19 no longer at interface
0:42 [VAL] a:2400 [G] 0:38 [LYS] A:2396 [G] ❌ 7K00_0:42 no longer at interface
0:10 [LYS] a:2419 [U] 0:6 [ARG] A:2415 [U] ❌ 7K00_0:10 no longer at interface
0:10 [LYS] a:2418 [A] 0:6 [ARG] A:2414 [A] ❌ 7K00_0:10 no longer at interface
0:10 [LYS] a:2399 [G] 0:6 [ARG] A:2395 [G] ❌ 7K00_0:10 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Rubredoxin-related Bacterial large subunit ribosomal RNA 0.99 2.45 0.80 0.94 0.99 0.96 0.9 0.93 0.83 0.58 0.50


Other pairs involving 7K00_0_a or 7RYG_0_A

Total number of entries: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_16_1A 7K00_0_a 0.78 0.96 1.51 0.52 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_16_1A 7RYG_0_A 0.80 0.96 2.89 0.39 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
6S0Z_1_A 7RYG_0_A 0.78 0.98 1.58 0.4 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
6S0Z_1_A 7K00_0_a 0.80 0.97 2.55 0.36 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
7K00_0_a 7RYG_0_A 0.93 0.99 2.45 0.8 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
7K00_0_a 7OF0_1_A 0.33 0.93 2.77 0.24 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
7OF0_1_A 7RYG_0_A 0.55 0.93 3.29 0.19 Rubredoxin-related Bacterial large subunit ribosomal RNA compare