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All interfaces > All interologs > Interface groups > group78 > 7OF0_1_A

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7OF0_1
7OF0_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1:15 [ASN] A:2847 [C] 4.85 43.19
1:15 [ASN] A:2848 [A] 2.56 A:2890 [U] 43.19
1:15 [ASN] A:2849 [G] 3.11 A:2889 [C] 43.19
1:17 [LEU] A:2908 [U] 3.86 A:2901 [A] 53.38
1:17 [LEU] A:2909 [G] 4.35 A:2900 [C] 53.38
1:19 [ARG] A:2903 [U] 4.42 44.65
1:19 [ARG] A:2905 [A] 3.6 44.65
1:19 [ARG] A:2906 [C] 3.18 44.65
1:19 [ARG] A:2907 [U] 4.66 A:2902 [A] 44.65
1:19 [ARG] A:2908 [U] 4.94 A:2901 [A] 44.65
1:27 [GLY] A:2904 [A] 4.46 81.82
1:27 [GLY] A:2905 [A] 3.5 81.82
1:27 [GLY] A:2906 [C] 4.9 81.82
1:29 [CYS] A:2905 [A] 3.9 19.46
1:29 [CYS] A:2906 [C] 3.48 19.46
1:30 [PHE] A:2852 [C] 3.56 71.03
1:31 [ASN] A:2907 [U] 3.12 A:2902 [A] sugar:SC 58.98
1:31 [ASN] A:2908 [U] 3.24 A:2901 [A] 58.98
1:32 [THR] A:2852 [C] 3.82 59.96
1:33 [LYS] A:2848 [A] 3.53 A:2890 [U] 47.74
1:33 [LYS] A:2850 [U] 5.0 A:2854 [U] 47.74
1:33 [LYS] A:2852 [C] 4.83 47.74
1:35 [ASN] A:2849 [G] 3.47 A:2889 [C] 67.31
1:38 [ARG] A:2850 [U] 4.45 A:2854 [U] 46.11
1:43 [LEU] A:2852 [C] 3.29 36.45
1:44 [LEU] A:2852 [C] 3.4 sugar:BB 53.69
1:45 [HIS] A:2852 [C] 2.52 sugar:SC 84.57
1:45 [HIS] A:2853 [A] 3.13 A:2878 [G] 84.57
1:45 [HIS] A:2855 [G] 4.63 A:2877 [C] 84.57
1:46 [TYR] A:2852 [C] 4.63 66.81
1:46 [TYR] A:2853 [A] 3.04 A:2878 [G] base/AA stacks 66.81
1:46 [TYR] A:2855 [G] 4.73 A:2877 [C] 66.81
1:51 [LYS] A:2853 [A] 4.07 A:2878 [G] 42.41
1:51 [LYS] A:2878 [G] 2.64 A:2853 [A] sugar:SC 42.41
1:51 [LYS] A:2879 [A] 3.63 42.41
1:53 [ARG] A:2853 [A] 4.15 A:2878 [G] 55.91
1:53 [ARG] A:2879 [A] 3.27 55.91
1:53 [ARG] A:2880 [A] 2.68 55.91
1:59 [LYS] A:2905 [A] 4.4 0.0
1:62 [ILE] A:2908 [U] 3.2 A:2901 [A] 54.95
1:63 [ARG] A:2908 [U] 4.58 A:2901 [A] 35.8
1:63 [ARG] A:2909 [G] 3.1 A:2900 [C] 35.8
1:63 [ARG] A:2910 [A] 2.82 A:2899 [C] 35.8
1:65 [LEU] A:2847 [C] 4.88 19.85
1:65 [LEU] A:2848 [A] 3.7 A:2890 [U] 19.85

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group78 7OF0_1_A 1: 39s ribosomal protein l33, mitochondrial, Homo sapiens (natural) A: 16s ribosomal RNA, Homo sapiens (natural) O75394 Rubredoxin-related Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0Z_1_A 7OF0_1_A 0.35 0.96 3.33 0.11 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
7OF0_1_A 7RYG_0_A 0.55 0.93 3.29 0.19 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
7K00_0_a 7OF0_1_A 0.33 0.93 2.77 0.24 Rubredoxin-related Bacterial large subunit ribosomal RNA compare
4Y4O_16_1A 7OF0_1_A 0.47 0.96 2.56 0.22 Rubredoxin-related Bacterial large subunit ribosomal RNA compare