Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7RYG_0
|
7RYG_A
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| 0:1 [MET] | A:2280 [A] | 4.03 | A:2380 [U] | 13.42 | ||
| 0:2 [ARG] | A:2280 [A] | 3.51 | A:2380 [U] | 66.61 | ||
| 0:2 [ARG] | A:2281 [C] | 2.44 | A:2379 [G] | 66.61 | ||
| 0:2 [ARG] | A:2282 [G] | 3.46 | 66.61 | |||
| 0:4 [LYS] | A:2416 [C] | 3.17 | A:2392 [G] | 17.68 | ||
| 0:4 [LYS] | A:2417 [G] | 3.29 | A:2391 [C] | 17.68 | ||
| 0:6 [ARG] | A:2394 [U] | 3.92 | A:2414 [A] | base:SC | 26.76 | |
| 0:6 [ARG] | A:2395 [G] | 3.7 | A:2413 [C] | 26.76 | ||
| 0:6 [ARG] | A:2414 [A] | 4.94 | A:2394 [U] | 26.76 | ||
| 0:6 [ARG] | A:2415 [U] | 4.58 | A:2393 [G] | 26.76 | ||
| 0:13 [THR] | A:2396 [G] | 4.42 | A:2412 [C] | 69.22 | ||
| 0:14 [GLY] | A:2395 [G] | 3.65 | A:2413 [C] | sugar:BB | 42.34 | |
| 0:14 [GLY] | A:2396 [G] | 4.94 | A:2412 [C] | 42.34 | ||
| 0:15 [TYR] | A:2344 [U] | 3.88 | A:2365 [A] | 21.13 | ||
| 0:16 [PHE] | A:2395 [G] | 4.27 | A:2413 [C] | 35.62 | ||
| 0:16 [PHE] | A:2414 [A] | 3.26 | A:2394 [U] | 35.62 | ||
| 0:16 [PHE] | A:2415 [U] | 3.69 | A:2393 [G] | 35.62 | ||
| 0:17 [TYR] | A:2343 [C] | 2.93 | A:2366 [G] | sugar:SC | 71.65 | |
| 0:17 [TYR] | A:2344 [U] | 4.01 | A:2365 [A] | 71.65 | ||
| 0:18 [THR] | A:2415 [U] | 3.94 | A:2393 [G] | 30.43 | ||
| 0:18 [THR] | A:2416 [C] | 4.25 | A:2392 [G] | 30.43 | ||
| 0:19 [THR] | A:2282 [G] | 3.12 | base:SC | 69.46 | ||
| 0:19 [THR] | A:2342 [A] | 4.16 | 69.46 | |||
| 0:20 [THR] | A:2281 [C] | 4.79 | A:2379 [G] | 21.68 | ||
| 0:20 [THR] | A:2282 [G] | 2.73 | base:BB | 21.68 | ||
| 0:21 [LYS] | A:2282 [G] | 3.77 | 85.79 | |||
| 0:22 [ASN] | A:2280 [A] | 4.79 | A:2380 [U] | 81.95 | ||
| 0:22 [ASN] | A:2281 [C] | 2.87 | A:2379 [G] | 81.95 | ||
| 0:22 [ASN] | A:2282 [G] | 4.82 | 81.95 | |||
| 0:25 [THR] | A:2281 [C] | 4.83 | A:2379 [G] | 50.68 | ||
| 0:25 [THR] | A:2282 [G] | 3.99 | 50.68 | |||
| 0:26 [MET] | A:2282 [G] | 3.47 | 26.45 | |||
| 0:30 [MET] | A:2282 [G] | 3.47 | 54.77 | |||
| 0:32 [ILE] | A:2282 [G] | 4.44 | 41.86 | |||
| 0:32 [ILE] | A:2340 [U] | 3.45 | A:2283 [A] | 41.86 | ||
| 0:33 [LYS] | A:2340 [U] | 3.23 | A:2283 [A] | sugar:BB | 62.13 | |
| 0:33 [LYS] | A:2341 [A] | 4.65 | A:2367 [G] | 62.13 | ||
| 0:34 [LYS] | A:2340 [U] | 4.41 | A:2283 [A] | 99.0 | ||
| 0:34 [LYS] | A:2341 [A] | 4.92 | A:2367 [G] | 99.0 | ||
| 0:34 [LYS] | A:2342 [A] | 3.39 | sugar:SC | 99.0 | ||
| 0:34 [LYS] | A:2343 [C] | 4.82 | A:2366 [G] | 99.0 | ||
| 0:35 [PHE] | A:2341 [A] | 4.94 | A:2367 [G] | 74.79 | ||
| 0:35 [PHE] | A:2343 [C] | 3.88 | A:2366 [G] | 74.79 | ||
| 0:35 [PHE] | A:2344 [U] | 3.65 | A:2365 [A] | 74.79 | ||
| 0:35 [PHE] | A:2366 [G] | 3.71 | A:2343 [C] | 74.79 | ||
| 0:35 [PHE] | A:2367 [G] | 4.0 | A:2341 [A] | 74.79 | ||
| 0:37 [PRO] | A:2344 [U] | 3.8 | A:2365 [A] | 71.05 | ||
| 0:38 [LYS] | A:2396 [G] | 4.98 | A:2412 [C] | 0.0 | ||
| 0:40 [ARG] | A:641 [A] | 3.27 | base/AA stacks | 63.57 | ||
| 0:40 [ARG] | A:2366 [G] | 4.0 | A:2343 [C] | 63.57 | ||
| 0:40 [ARG] | A:2367 [G] | 4.46 | A:2341 [A] | 63.57 | ||
| 0:41 [GLN] | A:2367 [G] | 4.37 | A:2341 [A] | 45.64 | ||
| 0:42 [HIS] | A:2341 [A] | 3.14 | A:2367 [G] | 75.26 | ||
| 0:42 [HIS] | A:2367 [G] | 2.87 | A:2341 [A] | sugar:SC | 75.26 | |
| 0:42 [HIS] | A:2368 [U] | 3.62 | A:2377 [A] | 75.26 | ||
| 0:50 [ILE] | A:2415 [U] | 4.25 | A:2393 [G] | 30.1 | ||
| 0:50 [ILE] | A:2416 [C] | 3.63 | A:2392 [G] | 30.1 | ||
| 0:51 [LYS] | A:2393 [G] | 3.4 | A:2415 [U] | base:BB | 43.05 | |
| 0:51 [LYS] | A:2394 [U] | 3.8 | A:2414 [A] | 43.05 | ||
| 0:51 [LYS] | A:2416 [C] | 3.55 | A:2392 [G] | sugar:SC | 43.05 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group78 | 7RYG_0_A | 0: 50s ribosomal protein l33, Acinetobacter baumannii (strain ab0057) (natural) A: 23s ribosomal RNA, Acinetobacter baumannii ab0057 (natural) | A0A7U4DFF9 | Rubredoxin-related | Bacterial large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 4
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 7OF0_1_A | 7RYG_0_A | 0.55 | 0.93 | 3.29 | 0.19 | Rubredoxin-related | Bacterial large subunit ribosomal RNA | compare |
| 6S0Z_1_A | 7RYG_0_A | 0.78 | 0.98 | 1.58 | 0.4 | Rubredoxin-related | Bacterial large subunit ribosomal RNA | compare |
| 4Y4O_16_1A | 7RYG_0_A | 0.80 | 0.96 | 2.89 | 0.39 | Rubredoxin-related | Bacterial large subunit ribosomal RNA | compare |
| 7K00_0_a | 7RYG_0_A | 0.93 | 0.99 | 2.45 | 0.8 | Rubredoxin-related | Bacterial large subunit ribosomal RNA | compare |