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All interfaces > All interologs > Interface groups > group79 > 4Y4O_17_1A

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

4Y4O_17
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
17:1 [MET] 1A:799 [A] 3.28 59.19
17:1 [MET] 1A:800 [C] 3.93 1A:791 [G] 59.19
17:1 [MET] 1A:1658 [C] 4.6 1A:1665 [G] 59.19
17:1 [MET] 1A:1665 [G] 2.81 1A:1658 [C] base:BB, base:BB, sugar:BB 59.19
17:1 [MET] 1A:1666 [G] 3.2 1A:1657 [C] 59.19
17:1 [MET] 1A:1812 [C] 3.76 59.19
17:2 [LYS] 1A:734 [C] 3.32 1A:1811 [A] 59.86
17:2 [LYS] 1A:735 [U] 3.31 1A:732 [A] 59.86
17:2 [LYS] 1A:815 [G] 4.81 1A:741 [U] 59.86
17:2 [LYS] 1A:1665 [G] 4.73 1A:1658 [C] 59.86
17:2 [LYS] 1A:1666 [G] 3.53 1A:1657 [C] 59.86
17:3 [ARG] 1A:734 [C] 3.48 1A:1811 [A] 51.0
17:3 [ARG] 1A:797 [A] 4.42 1A:792 [G] 51.0
17:3 [ARG] 1A:798 [A] 4.96 51.0
17:3 [ARG] 1A:799 [A] 2.96 51.0
17:3 [ARG] 1A:836 [A] 3.36 base/AA stacks 51.0
17:3 [ARG] 1A:1658 [C] 3.45 1A:1665 [G] 51.0
17:3 [ARG] 1A:1659 [G] 3.03 51.0
17:3 [ARG] 1A:1665 [G] 4.32 1A:1658 [C] 51.0
17:3 [ARG] 1A:1812 [C] 4.47 51.0
17:4 [THR] 1A:490 [U] 4.36 72.59
17:4 [THR] 1A:733 [G] 2.72 sugar:BB 72.59
17:4 [THR] 1A:734 [C] 3.35 1A:1811 [A] 72.59
17:4 [THR] 1A:835 [A] 3.34 72.59
17:4 [THR] 1A:836 [A] 4.05 72.59
17:4 [THR] 1A:1658 [C] 4.74 1A:1665 [G] 72.59
17:5 [TRP] 1A:490 [U] 3.22 30.84
17:5 [TRP] 1A:733 [G] 3.1 30.84
17:5 [TRP] 1A:835 [A] 4.32 30.84
17:5 [TRP] 1A:1658 [C] 2.8 1A:1665 [G] sugar:BB 30.84
17:5 [TRP] 1A:1659 [G] 3.47 30.84
17:6 [GLN] 1A:733 [G] 2.84 sugar:BB 61.9
17:6 [GLN] 1A:734 [C] 3.55 1A:1811 [A] 61.9
17:6 [GLN] 1A:1658 [C] 3.84 1A:1665 [G] 61.9
17:7 [PRO] 1A:733 [G] 3.83 56.67
17:7 [PRO] 1A:1354 [A] 4.85 1A:1652 [G] 56.67
17:7 [PRO] 1A:1355 [G] 3.2 1A:1651 [C] 56.67
17:7 [PRO] 1A:1356 [G] 3.86 1A:1650 [C] 56.67
17:7 [PRO] 1A:1657 [C] 4.47 1A:1666 [G] 56.67
17:7 [PRO] 1A:1658 [C] 3.59 1A:1665 [G] 56.67
17:8 [ASN] 1A:733 [G] 3.59 base:BB 78.73
17:8 [ASN] 1A:816 [G] 4.46 1A:740 [C] 78.73
17:8 [ASN] 1A:817 [G] 3.18 1A:739 [C] 78.73
17:8 [ASN] 1A:1355 [G] 3.87 1A:1651 [C] 78.73
17:9 [ARG] 1A:123 [G] 3.5 36.77
17:9 [ARG] 1A:1355 [G] 2.95 1A:1651 [C] 36.77
17:9 [ARG] 1A:1356 [G] 2.53 1A:1650 [C] 36.77
17:9 [ARG] 1A:1357 [G] 2.74 base:SC, base:SC 36.77
17:10 [ARG] 1A:123 [G] 3.18 34.52
17:10 [ARG] 1A:817 [G] 3.51 1A:739 [C] 34.52
17:10 [ARG] 1A:818 [G] 3.27 1A:738 [C] 34.52
17:10 [ARG] 1A:1355 [G] 4.47 1A:1651 [C] 34.52
17:10 [ARG] 1A:1423 [G] 3.15 1A:1400 [A] 34.52
17:10 [ARG] 1A:1424 [A] 2.23 1A:1398 [U] 34.52
17:11 [LYS] 1A:732 [A] 2.85 1A:735 [U] 73.5
17:11 [LYS] 1A:733 [G] 2.98 73.5
17:12 [ARG] 1A:490 [U] 3.04 sugar:SC 77.16
17:12 [ARG] 1A:491 [G] 2.68 77.16
17:12 [ARG] 1A:733 [G] 3.12 base:SC 77.16
17:13 [ALA] 1A:123 [G] 3.43 47.53
17:13 [ALA] 1A:124 [A] 3.81 47.53
17:14 [LYS] 1A:123 [G] 3.69 81.08
17:14 [LYS] 1A:818 [G] 3.2 1A:738 [C] 81.08
17:15 [THR] 1A:731 [G] 3.64 53.09
17:15 [THR] 1A:732 [A] 4.31 1A:735 [U] 53.09
17:15 [THR] 1A:733 [G] 3.89 53.09
17:16 [HIS] 1A:490 [U] 2.8 sugar:SC 76.79
17:16 [HIS] 1A:491 [G] 3.06 76.79
17:16 [HIS] 1A:730 [C] 4.61 1A:841 [G] 76.79
17:16 [HIS] 1A:731 [G] 2.65 76.79
17:16 [HIS] 1A:733 [G] 2.85 base:SC 76.79
17:17 [GLY] 1A:124 [A] 3.65 99.0
17:18 [PHE] 1A:115 [G] 3.68 1A:52 [A] 82.22
17:18 [PHE] 1A:116 [A] 4.28 1A:50 [G] 82.22
17:18 [PHE] 1A:124 [A] 3.37 base/AA stacks 82.22
17:19 [ARG] 1A:115 [G] 4.12 1A:52 [A] 72.93
17:19 [ARG] 1A:122 [G] 3.22 base/AA stacks 72.93
17:19 [ARG] 1A:123 [G] 3.18 72.93
17:19 [ARG] 1A:124 [A] 2.93 72.93
17:20 [ALA] 1A:124 [A] 4.11 55.29
17:21 [ARG] 1A:491 [G] 3.1 sugar:SC 98.55
17:21 [ARG] 1A:492 [A] 3.78 1A:489 [G] 98.55
17:21 [ARG] 1A:730 [C] 3.57 1A:841 [G] 98.55
17:21 [ARG] 1A:731 [G] 2.93 98.55
17:22 [MET] 1A:115 [G] 4.6 1A:52 [A] 66.14
17:22 [MET] 1A:116 [A] 3.36 1A:50 [G] 66.14
17:23 [ARG] 1A:1402 [G] 4.17 1A:1421 [C] 30.64
17:23 [ARG] 1A:1403 [U] 3.22 1A:1420 [G] 30.64
17:24 [THR] 1A:730 [C] 3.93 1A:841 [G] 82.4
17:25 [PRO] 1A:199 [C] 4.46 1A:175 [G] 24.02
17:25 [PRO] 1A:1413 [A] 3.52 1A:1410 [G] 24.02
17:25 [PRO] 1A:1414 [G] 3.38 1A:1409 [C] 24.02
17:26 [GLY] 1A:729 [G] 3.58 1A:842 [C] 29.03
17:26 [GLY] 1A:730 [C] 3.39 1A:841 [G] 29.03
17:27 [GLY] 1A:729 [G] 4.56 1A:842 [C] 95.25
17:27 [GLY] 1A:730 [C] 3.33 1A:841 [G] 95.25
17:28 [ARG] 1A:1413 [A] 4.3 1A:1410 [G] 74.32
17:28 [ARG] 1A:1414 [G] 2.95 1A:1409 [C] 74.32
17:29 [LYS] 1A:198 [C] 3.6 1A:176 [G] 14.86
17:29 [LYS] 1A:199 [C] 2.62 1A:175 [G] 14.86
17:30 [VAL] 1A:492 [A] 3.71 1A:489 [G] 55.95
17:30 [VAL] 1A:493 [G] 4.1 1A:488 [C] 55.95
17:30 [VAL] 1A:729 [G] 4.61 1A:842 [C] 55.95
17:30 [VAL] 1A:730 [C] 4.13 1A:841 [G] 55.95
17:32 [LYS] 1A:169 [G] 3.28 38.46
17:32 [LYS] 1A:170 [A] 4.19 38.46
17:33 [ARG] 1A:492 [A] 3.18 1A:489 [G] 70.89
17:33 [ARG] 1A:493 [G] 3.13 1A:488 [C] 70.89
17:33 [ARG] 1A:729 [G] 3.96 1A:842 [C] sugar:SC 70.89
17:34 [ARG] 1A:492 [A] 3.23 1A:489 [G] 87.83
17:34 [ARG] 1A:493 [G] 2.96 1A:488 [C] 87.83
17:35 [ARG] 1A:52 [A] 3.79 1A:115 [G] base/AA stacks 82.15
17:35 [ARG] 1A:53 [G] 3.05 1A:114 [C] sugar:SC 82.15
17:35 [ARG] 1A:124 [A] 4.85 82.15
17:36 [GLN] 1A:170 [A] 3.54 42.23
17:36 [GLN] 1A:171 [A] 4.19 1A:204 [G] 42.23
17:37 [LYS] 1A:484 [G] 3.26 73.28
17:37 [LYS] 1A:494 [G] 2.72 1A:487 [C] 73.28
17:37 [LYS] 1A:495 [G] 3.1 1A:486 [A] base:SC, base:SC 73.28
17:38 [GLY] 1A:484 [G] 3.16 73.07
17:38 [GLY] 1A:485 [U] 4.11 1A:496 [A] 73.07
17:39 [ARG] 1A:484 [G] 3.4 87.29
17:39 [ARG] 1A:485 [U] 2.9 1A:496 [A] 87.29
17:39 [ARG] 1A:487 [C] 4.77 1A:494 [G] 87.29
17:39 [ARG] 1A:493 [G] 3.3 1A:488 [C] 87.29
17:39 [ARG] 1A:494 [G] 2.57 1A:487 [C] base:SC, base:SC 87.29
17:39 [ARG] 1A:495 [G] 3.26 1A:486 [A] base/AA stacks 87.29
17:40 [TRP] 1A:54 [G] 4.84 1A:113 [C] 31.64
17:40 [TRP] 1A:55 [A] 4.66 1A:112 [U] 31.64
17:40 [TRP] 1A:483 [A] 4.18 1A:497 [A] 31.64
17:40 [TRP] 1A:484 [G] 2.99 31.64
17:40 [TRP] 1A:485 [U] 2.88 1A:496 [A] 31.64
17:41 [ARG] 1A:485 [U] 4.77 1A:496 [A] 16.77
17:41 [ARG] 1A:486 [A] 3.17 1A:495 [G] 16.77
17:42 [LEU] 1A:53 [G] 4.42 1A:114 [C] 64.77
17:42 [LEU] 1A:124 [A] 4.1 64.77
17:42 [LEU] 1A:492 [A] 4.38 1A:489 [G] 64.77
17:43 [THR] 1A:124 [A] 4.66 56.99
17:44 [PRO] 1A:491 [G] 3.99 39.64
17:44 [PRO] 1A:492 [A] 4.74 1A:489 [G] 39.64
17:46 [VAL] 1A:123 [G] 4.63 0.0
17:47 [ARG] 1A:1357 [G] 2.58 sugar:SC base/AA stacks 2.88
17:48 [LYS] 1A:123 [G] 3.3 48.64
17:48 [LYS] 1A:124 [A] 3.77 48.64
17:48 [LYS] 1A:125 [A] 3.82 48.64

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group79 4Y4O_17_1A 17: 50s ribosomal protein l34, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) P80340 50S ribosomal protein L34 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_17_1A 7OF0_2_A 0.75 0.97 1.48 0.43 50S ribosomal protein L34 Bacterial large subunit ribosomal RNA compare
4Y4O_17_1A 7RYG_1_A 0.90 0.96 1.39 0.64 50S ribosomal protein L34 Bacterial large subunit ribosomal RNA compare
4Y4O_17_1A 7K00_1_a 0.87 0.96 1.08 0.63 50S ribosomal protein L34 Bacterial large subunit ribosomal RNA compare
4Y4O_17_1A 6S0Z_2_A 0.92 0.96 1.23 0.67 50S ribosomal protein L34 Bacterial large subunit ribosomal RNA compare