Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
3IEV_A
|
3IEV_D
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
---|---|---|---|---|---|---|
A:205 [LEU] | D:1531 [A] | 4.11 | 9.21 | |||
A:206 [THR] | D:1531 [A] | 3.75 | 69.62 | |||
A:207 [ARG] | D:1531 [A] | 2.92 | base:BB, base:BB | base/AA stacks | 61.17 | |
A:208 [GLU] | D:1531 [A] | 3.82 | 65.9 | |||
A:210 [VAL] | D:1531 [A] | 3.38 | 78.6 | |||
A:222 [LYS] | D:1538 [C] | 3.16 | base:SC, base:SC | 38.98 | ||
A:223 [PRO] | D:1538 [C] | 4.36 | 60.81 | |||
A:224 [GLY] | D:1538 [C] | 3.74 | 53.75 | |||
A:225 [ASP] | D:1538 [C] | 3.11 | base:BB, sugar:BB | 44.02 | ||
A:225 [ASP] | D:1539 [C] | 3.24 | sugar:SC | 44.02 | ||
A:226 [ALA] | D:1538 [C] | 2.8 | sugar:BB | 41.98 | ||
A:226 [ALA] | D:1539 [C] | 3.86 | 41.98 | |||
A:227 [ASN] | D:1538 [C] | 3.97 | 45.9 | |||
A:230 [MET] | D:1537 [U] | 3.85 | 17.33 | |||
A:230 [MET] | D:1538 [C] | 3.39 | 17.33 | |||
A:232 [VAL] | D:1538 [C] | 4.02 | 31.58 | |||
A:234 [LYS] | D:1538 [C] | 3.84 | 8.67 | |||
A:242 [GLU] | D:1533 [C] | 3.76 | 49.41 | |||
A:245 [LYS] | D:1533 [C] | 2.68 | base:SC, base:SC | 93.11 | ||
A:245 [LYS] | D:1534 [A] | 3.53 | 93.11 | |||
A:246 [PRO] | D:1531 [A] | 4.65 | 37.8 | |||
A:246 [PRO] | D:1532 [U] | 3.8 | 37.8 | |||
A:246 [PRO] | D:1533 [C] | 3.47 | 37.8 | |||
A:247 [ILE] | D:1531 [A] | 3.66 | 94.15 | |||
A:249 [ILE] | D:1533 [C] | 3.45 | 89.82 | |||
A:249 [ILE] | D:1534 [A] | 3.4 | 89.82 | |||
A:250 [GLY] | D:1532 [U] | 3.43 | 98.89 | |||
A:250 [GLY] | D:1533 [C] | 3.34 | 98.89 | |||
A:251 [LYS] | D:1532 [U] | 2.84 | 70.77 | |||
A:251 [LYS] | D:1533 [C] | 4.06 | 70.77 | |||
A:252 [LYS] | D:1534 [A] | 3.75 | 41.25 | |||
A:252 [LYS] | D:1535 [C] | 3.28 | 41.25 | |||
A:253 [GLY] | D:1534 [A] | 3.61 | 97.42 | |||
A:253 [GLY] | D:1535 [C] | 3.66 | 97.42 | |||
A:254 [GLN] | D:1531 [A] | 4.59 | 26.35 | |||
A:254 [GLN] | D:1532 [U] | 3.15 | 26.35 | |||
A:255 [ARG] | D:1531 [A] | 2.88 | sugar:SC | 63.13 | ||
A:255 [ARG] | D:1532 [U] | 3.48 | 63.13 | |||
A:256 [LEU] | D:1534 [A] | 3.21 | 87.58 | |||
A:256 [LEU] | D:1535 [C] | 3.87 | 87.58 | |||
A:257 [LYS] | D:1535 [C] | 3.86 | 87.53 | |||
A:257 [LYS] | D:1536 [C] | 3.2 | 87.53 | |||
A:260 [GLY] | D:1536 [C] | 3.04 | 77.82 | |||
A:261 [LYS] | D:1536 [C] | 3.42 | 58.35 | |||
A:264 [ARG] | D:1536 [C] | 2.65 | base:SC, base:SC | 91.81 | ||
A:264 [ARG] | D:1537 [U] | 3.31 | 91.81 | |||
A:268 [GLU] | D:1537 [U] | 4.72 | 73.53 | |||
A:275 [VAL] | D:1537 [U] | 2.78 | sugar:BB | 86.34 | ||
A:276 [TYR] | D:1537 [U] | 3.42 | base/AA stacks | 36.69 | ||
A:276 [TYR] | D:1538 [C] | 3.21 | 36.69 | |||
A:276 [TYR] | D:1539 [C] | 4.32 | 36.69 | |||
A:277 [LEU] | D:1536 [C] | 4.1 | 92.65 | |||
A:277 [LEU] | D:1537 [U] | 2.77 | base:BB, base:BB | 92.65 | ||
A:278 [GLU] | D:1537 [U] | 4.74 | 51.2 | |||
A:278 [GLU] | D:1538 [C] | 3.41 | base:SC | 51.2 | ||
A:278 [GLU] | D:1539 [C] | 4.18 | 51.2 | |||
A:279 [LEU] | D:1534 [A] | 3.96 | 78.9 | |||
A:279 [LEU] | D:1535 [C] | 2.69 | base:BB | 78.9 | ||
A:280 [TRP] | D:1534 [A] | 3.46 | base/AA stacks | 0.08 | ||
A:280 [TRP] | D:1535 [C] | 4.54 | 0.08 | |||
A:281 [VAL] | D:1534 [A] | 2.88 | base:BB, base:BB | 93.47 |
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
---|---|---|---|---|---|---|---|
group8 | 3IEV_A_D | A: Gtp-binding protein era, Aquifex aeolicus (genetically engineered) D: N/A | O67800 | Prokaryotic type KH domain (KH-domain type II) | ✘ |
Interologs
Total number of interologs for this interface: 1
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
3IEV_A_D | 3R9W_A_B | 0.97 | 0.99 | 0.63 | 0.95 | Prokaryotic type KH domain (KH-domain type II) | compare |