RNAprotDB

Contacts -

3R9W_A	3R9W_B	Distance	Hbond nuc:res	Base Stacking	Residue conservation
A:66 [LYS]	B:1523 [G]	3.43			55.56
A:66 [LYS]	B:1524 [C]	3.33			55.56
A:67 [LYS]	B:1524 [C]	4.95			34.9
A:68 [SER]	B:1524 [C]	4.27			73.18
A:205 [LEU]	B:1531 [A]	4.05			9.21
A:206 [THR]	B:1531 [A]	3.65			69.62
A:207 [ARG]	B:1530 [G]	4.91			61.17
A:207 [ARG]	B:1531 [A]	3.08	base:BB, base:BB	base/AA stacks	61.17
A:208 [GLU]	B:1530 [G]	2.73	base:SC		65.9
A:208 [GLU]	B:1531 [A]	3.86			65.9
A:209 [GLU]	B:1530 [G]	2.66	base:SC, base:SC		98.73
A:209 [GLU]	B:1531 [A]	4.94			98.73
A:210 [VAL]	B:1530 [G]	4.25			78.6
A:210 [VAL]	B:1531 [A]	3.69			78.6
A:222 [LYS]	B:1538 [C]	4.66			38.98
A:224 [GLY]	B:1538 [C]	2.99			53.75
A:225 [ASP]	B:1538 [C]	2.72	base:BB, base:BB	base/AA stacks	44.02
A:225 [ASP]	B:1539 [C]	3.78			44.02
A:226 [ALA]	B:1538 [C]	2.91	base:BB		41.98
A:226 [ALA]	B:1539 [C]	4.04			41.98
A:227 [ASN]	B:1538 [C]	3.44	base:BB		45.9
A:230 [MET]	B:1537 [U]	4.17			17.33
A:230 [MET]	B:1538 [C]	3.21			17.33
A:232 [VAL]	B:1538 [C]	4.3			31.58
A:241 [ARG]	B:1529 [G]	3.64			76.92
A:241 [ARG]	B:1530 [G]	2.76	base:SC		76.92
A:242 [GLU]	B:1533 [C]	3.11	base:SC		49.41
A:243 [ASN]	B:1529 [G]	3.33	base:SC		83.55
A:243 [ASN]	B:1530 [G]	3.06	base:SC		83.55
A:244 [LEU]	B:1530 [G]	3.51			84.24
A:245 [LYS]	B:1533 [C]	3.05	base:SC		93.11
A:245 [LYS]	B:1534 [A]	4.13			93.11
A:246 [PRO]	B:1531 [A]	4.04			37.8
A:246 [PRO]	B:1532 [U]	3.93			37.8
A:246 [PRO]	B:1533 [C]	3.02			37.8
A:247 [ILE]	B:1530 [G]	3.87			94.15
A:247 [ILE]	B:1531 [A]	3.54			94.15
A:249 [ILE]	B:1533 [C]	3.53			89.82
A:249 [ILE]	B:1534 [A]	3.27			89.82
A:250 [GLY]	B:1532 [U]	3.47			98.89
A:250 [GLY]	B:1533 [C]	3.41			98.89
A:251 [LYS]	B:1531 [A]	4.89			70.77
A:251 [LYS]	B:1532 [U]	2.71	sugar:SC		70.77
A:251 [LYS]	B:1533 [C]	3.5			70.77
A:252 [LYS]	B:1533 [C]	4.36			41.25
A:252 [LYS]	B:1534 [A]	4.06			41.25
A:252 [LYS]	B:1535 [C]	3.08			41.25
A:253 [GLY]	B:1534 [A]	3.87			97.42
A:253 [GLY]	B:1535 [C]	3.74			97.42
A:254 [GLN]	B:1535 [C]	4.07			26.35
A:254 [GLN]	B:1536 [C]	3.46			26.35
A:255 [ARG]	B:1531 [A]	3.09	sugar:SC		63.13
A:255 [ARG]	B:1532 [U]	3.51			63.13
A:256 [LEU]	B:1534 [A]	3.6			87.58
A:256 [LEU]	B:1535 [C]	3.55			87.58
A:257 [LYS]	B:1535 [C]	3.45			87.53
A:257 [LYS]	B:1536 [C]	3.01			87.53
A:260 [GLY]	B:1536 [C]	3.01			77.82
A:261 [LYS]	B:1536 [C]	3.57			58.35
A:264 [ARG]	B:1536 [C]	2.92	base:SC, base:SC		91.81
A:264 [ARG]	B:1537 [U]	3.44			91.81
A:268 [GLU]	B:1537 [U]	4.66			73.53
A:275 [VAL]	B:1537 [U]	2.77	sugar:BB		86.34
A:276 [TYR]	B:1537 [U]	3.42		base/AA stacks	36.69
A:276 [TYR]	B:1538 [C]	3.31			36.69
A:277 [LEU]	B:1536 [C]	3.99			92.65
A:277 [LEU]	B:1537 [U]	2.68	base:BB, base:BB		92.65
A:278 [GLU]	B:1537 [U]	4.71			51.2
A:279 [LEU]	B:1534 [A]	3.79			78.9
A:279 [LEU]	B:1535 [C]	2.76	base:BB		78.9
A:280 [TRP]	B:1534 [A]	3.2			0.08
A:280 [TRP]	B:1535 [C]	3.09			0.08
A:281 [VAL]	B:1534 [A]	2.94	base:BB, base:BB		93.47
A:289 [ARG]	B:1525 [G]	2.77			55.03

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

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