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All interfaces > All interologs > Interface groups > group81 > 4Y4O_19_1A

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Licorice
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RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_19
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
19:1 [MET] 1A:2538 [G] 2.66 1A:2549 [U] base:BB, base:BB, sugar:BB 85.38
19:1 [MET] 1A:2539 [C] 3.0 1A:2548 [G] sugar:BB 85.38
19:1 [MET] 1A:2550 [C] 4.33 1A:2537 [G] 85.38
19:1 [MET] 1A:2755 [C] 3.68 1A:2775 [G] 85.38
19:1 [MET] 1A:2756 [C] 4.17 1A:2774 [G] 85.38
19:2 [LYS] 1A:2489 [C] 4.13 80.9
19:2 [LYS] 1A:2490 [A] 2.31 1A:2484 [G] 80.9
19:2 [LYS] 1A:2491 [G] 4.96 1A:2483 [C] 80.9
19:3 [VAL] 1A:2477 [C] 4.76 1A:2497 [G] 51.23
19:3 [VAL] 1A:2550 [C] 3.93 1A:2537 [G] 51.23
19:3 [VAL] 1A:2551 [C] 3.86 1A:2536 [G] 51.23
19:4 [ARG] 1A:2477 [C] 4.67 1A:2497 [G] 40.28
19:4 [ARG] 1A:2478 [C] 3.44 1A:2496 [G] 40.28
19:4 [ARG] 1A:2489 [C] 2.94 base:SC, base:SC, sugar:SC 40.28
19:5 [ALA] 1A:1075 [A] 4.09 1A:1171 [G] 31.59
19:5 [ALA] 1A:1076 [G] 3.26 1A:1170 [C] base:BB 31.59
19:5 [ALA] 1A:1077 [G] 3.65 1A:1169 [C] 31.59
19:5 [ALA] 1A:1170 [C] 4.6 1A:1076 [G] 31.59
19:5 [ALA] 1A:1171 [G] 3.46 1A:1075 [A] 31.59
19:5 [ALA] 1A:2477 [C] 3.44 1A:2497 [G] 31.59
19:5 [ALA] 1A:2478 [C] 3.26 1A:2496 [G] 31.59
19:6 [SER] 1A:1076 [G] 3.91 1A:1170 [C] 86.57
19:6 [SER] 1A:1077 [G] 3.29 1A:1169 [C] 86.57
19:6 [SER] 1A:2477 [C] 4.69 1A:2497 [G] 86.57
19:6 [SER] 1A:2478 [C] 3.03 1A:2496 [G] 86.57
19:6 [SER] 1A:2479 [C] 2.7 1A:2495 [C] 86.57
19:7 [VAL] 1A:1077 [G] 2.66 1A:1169 [C] sugar:BB, sugar:BB 46.18
19:7 [VAL] 1A:1078 [A] 3.48 1A:1168 [G] 46.18
19:8 [LYS] 1A:1077 [G] 3.46 1A:1169 [C] 52.88
19:8 [LYS] 1A:1078 [A] 3.69 1A:1168 [G] 52.88
19:8 [LYS] 1A:2479 [C] 3.93 1A:2495 [C] 52.88
19:8 [LYS] 1A:2480 [G] 3.89 1A:2494 [G] 52.88
19:9 [ARG] 1A:1078 [A] 4.22 1A:1168 [G] 18.59
19:9 [ARG] 1A:1079 [U] 3.01 18.59
19:10 [ILE] 1A:2489 [C] 3.79 46.66
19:12 [ASP] 1A:1136 [U] 4.77 1A:1147 [U] 0.0
19:12 [ASP] 1A:1137 [G] 3.68 1A:1146 [C] 0.0
19:15 [LYS] 1A:2763 [A] 4.71 1A:2765 [C] 32.81
19:15 [LYS] 1A:2766 [A] 2.49 1A:2762 [A] base:SC 32.81
19:15 [LYS] 1A:2767 [U] 3.32 1A:2761 [A] sugar:SC 32.81
19:16 [VAL] 1A:1078 [A] 3.47 1A:1168 [G] 6.0
19:16 [VAL] 1A:1079 [U] 3.77 6.0
19:17 [ILE] 1A:2767 [U] 3.23 1A:2761 [A] 76.22
19:17 [ILE] 1A:2769 [U] 4.62 1A:2771 [A] 76.22
19:18 [ARG] 1A:1080 [G] 3.51 1A:1167 [C] 33.36
19:18 [ARG] 1A:1168 [G] 4.54 1A:1078 [A] 33.36
19:18 [ARG] 1A:1169 [C] 3.01 1A:1077 [G] sugar:SC 33.36
19:18 [ARG] 1A:2769 [U] 3.88 1A:2771 [A] 33.36
19:18 [ARG] 1A:2770 [A] 4.05 1A:2760 [G] 33.36
19:19 [ARG] 1A:2767 [U] 3.02 1A:2761 [A] 99.0
19:19 [ARG] 1A:2768 [C] 2.99 base/AA stacks 99.0
19:19 [ARG] 1A:2769 [U] 2.72 1A:2771 [A] 99.0
19:19 [ARG] 1A:2770 [A] 3.71 1A:2760 [G] 99.0
19:20 [HIS] 1A:2768 [C] 3.61 8.0
19:20 [HIS] 1A:2769 [U] 3.01 1A:2771 [A] sugar:SC 8.0
19:20 [HIS] 1A:2770 [A] 2.75 1A:2760 [G] 8.0
19:21 [GLY] 1A:1169 [C] 3.27 1A:1077 [G] sugar:BB 64.26
19:21 [GLY] 1A:1170 [C] 4.67 1A:1076 [G] 64.26
19:21 [GLY] 1A:2770 [A] 4.37 1A:2760 [G] 64.26
19:22 [ARG] 1A:2753 [A] 4.85 24.51
19:22 [ARG] 1A:2754 [A] 3.06 1A:2776 [G] 24.51
19:22 [ARG] 1A:2755 [C] 4.11 1A:2775 [G] 24.51
19:23 [VAL] 1A:1077 [G] 4.5 1A:1169 [C] 13.08
19:23 [VAL] 1A:1078 [A] 4.01 1A:1168 [G] 13.08
19:24 [TYR] 1A:2755 [C] 2.92 1A:2775 [G] 4.13
19:26 [ILE] 1A:2767 [U] 4.07 1A:2761 [A] 38.77
19:26 [ILE] 1A:2768 [C] 4.86 38.77
19:30 [PRO] 1A:2539 [C] 3.67 1A:2548 [G] 31.38
19:30 [PRO] 1A:2540 [U] 3.87 1A:2547 [G] 31.38
19:31 [LYS] 1A:2490 [A] 2.93 1A:2484 [G] 57.74
19:31 [LYS] 1A:2539 [C] 3.96 1A:2548 [G] 57.74
19:31 [LYS] 1A:2540 [U] 3.57 1A:2547 [G] 57.74
19:31 [LYS] 1A:2541 [G] 2.75 1A:2487 [C] base:SC, base:SC 57.74
19:33 [LYS] 1A:2538 [G] 2.91 1A:2549 [U] sugar:SC 72.76
19:33 [LYS] 1A:2539 [C] 3.56 1A:2548 [G] 72.76
19:33 [LYS] 1A:2755 [C] 4.72 1A:2775 [G] 72.76
19:33 [LYS] 1A:2756 [C] 3.04 1A:2774 [G] 72.76
19:35 [ARG] 1A:2551 [C] 3.18 1A:2536 [G] sugar:SC 66.56
19:35 [ARG] 1A:2552 [C] 4.59 1A:2535 [G] 66.56
19:35 [ARG] 1A:2754 [A] 3.41 1A:2776 [G] 66.56
19:35 [ARG] 1A:2755 [C] 3.13 1A:2775 [G] 66.56
19:36 [GLN] 1A:1076 [G] 3.61 1A:1170 [C] 83.71
19:36 [GLN] 1A:1077 [G] 2.98 1A:1169 [C] base:SC, base:SC 83.71
19:36 [GLN] 1A:1169 [C] 4.96 1A:1077 [G] 83.71
19:36 [GLN] 1A:1170 [C] 3.31 1A:1076 [G] base/AA stacks 83.71
19:37 [GLY] 1A:1170 [C] 3.83 1A:1076 [G] 28.65
19:37 [GLY] 1A:1171 [G] 3.49 1A:1075 [A] 28.65

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group81 4Y4O_19_1A 19: 50s ribosomal protein l36, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) Q5SHR2 Ribosomal protein L36 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_19_1A 6S0Z_4_A 0.89 0.97 1.62 0.74 Ribosomal protein L36 Bacterial large subunit ribosomal RNA compare
4Y4O_19_1A 7K00_3_a 0.92 0.96 1.0 0.69 Ribosomal protein L36 Bacterial large subunit ribosomal RNA compare
4Y4O_19_1A 7OF0_4_A 0.50 0.97 3.13 0.33 Ribosomal protein L36 Bacterial large subunit ribosomal RNA compare
4Y4O_19_1A 7RYG_3_A 0.64 0.96 2.87 0.58 Ribosomal protein L36 Bacterial large subunit ribosomal RNA compare