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All interfaces > All interologs > Interface groups > group81 > 6S0Z_4_A

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Licorice
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RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

6S0Z_4
6S0Z_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
4:1 [MET] A:2553 [G] 2.75 A:2564 [U] base:BB, sugar:BB 94.7
4:1 [MET] A:2554 [C] 3.59 A:2563 [G] sugar:BB 94.7
4:1 [MET] A:2565 [C] 4.88 A:2552 [G] 94.7
4:1 [MET] A:2769 [G] 4.18 A:2789 [U] 94.7
4:2 [LYS] A:2504 [C] 4.28 80.58
4:2 [LYS] A:2505 [A] 4.07 A:2499 [G] 80.58
4:3 [VAL] A:2565 [C] 3.32 A:2552 [G] 70.94
4:3 [VAL] A:2566 [C] 3.7 A:2551 [G] 70.94
4:4 [ARG] A:2493 [C] 3.7 A:2511 [G] 31.69
4:4 [ARG] A:2504 [C] 2.67 base:SC, sugar:SC 31.69
4:5 [PRO] A:1073 [A] 4.78 A:1169 [G] 49.37
4:5 [PRO] A:1074 [G] 3.75 A:1168 [C] 49.37
4:5 [PRO] A:1075 [G] 4.12 A:1167 [C] 49.37
4:5 [PRO] A:1168 [C] 4.73 A:1074 [G] 49.37
4:5 [PRO] A:1169 [G] 3.31 A:1073 [A] 49.37
4:5 [PRO] A:2492 [C] 3.28 A:2512 [G] 49.37
4:5 [PRO] A:2493 [C] 3.6 A:2511 [G] 49.37
4:6 [SER] A:1074 [G] 4.28 A:1168 [C] 92.48
4:6 [SER] A:1075 [G] 3.76 A:1167 [C] 92.48
4:6 [SER] A:2493 [C] 3.56 A:2511 [G] 92.48
4:6 [SER] A:2494 [C] 2.91 A:2510 [C] 92.48
4:7 [VAL] A:1075 [G] 2.86 A:1167 [C] sugar:BB 52.11
4:7 [VAL] A:1076 [A] 3.49 A:1166 [G] 52.11
4:8 [LYS] A:1075 [G] 3.57 A:1167 [C] 63.67
4:8 [LYS] A:1076 [A] 3.85 A:1166 [G] 63.67
4:8 [LYS] A:2494 [C] 3.23 A:2510 [C] 63.67
4:8 [LYS] A:2495 [A] 3.47 A:2509 [A] 63.67
4:9 [PRO] A:1076 [A] 4.54 A:1166 [G] 19.98
4:10 [ILE] A:2504 [C] 4.06 35.27
4:13 [LYS] A:1136 [C] 4.74 A:1115 [G] 9.81
4:15 [LYS] A:2780 [A] 3.17 A:2776 [A] sugar:SC 37.81
4:16 [VAL] A:1076 [A] 3.78 A:1166 [G] 14.36
4:16 [VAL] A:1077 [U] 3.38 14.36
4:17 [ILE] A:2781 [U] 4.87 A:2775 [A] 75.39
4:17 [ILE] A:2783 [U] 4.49 A:2785 [A] 75.39
4:18 [LYS] A:1077 [U] 4.4 37.03
4:18 [LYS] A:1078 [G] 3.94 A:1165 [C] 37.03
4:18 [LYS] A:1167 [C] 4.95 A:1075 [G] 37.03
4:18 [LYS] A:2783 [U] 3.9 A:2785 [A] 37.03
4:18 [LYS] A:2784 [A] 3.94 A:2774 [G] 37.03
4:19 [ARG] A:2781 [U] 3.84 A:2775 [A] 99.0
4:19 [ARG] A:2782 [C] 3.81 base/AA stacks 99.0
4:19 [ARG] A:2783 [U] 2.81 A:2785 [A] 99.0
4:19 [ARG] A:2784 [A] 3.68 A:2774 [G] 99.0
4:20 [LYS] A:2767 [A] 4.89 0.96
4:20 [LYS] A:2768 [A] 3.13 A:2790 [G] 0.96
4:20 [LYS] A:2769 [G] 4.35 A:2789 [U] 0.96
4:20 [LYS] A:2783 [U] 4.16 A:2785 [A] 0.96
4:20 [LYS] A:2784 [A] 3.28 A:2774 [G] 0.96
4:21 [GLY] A:1167 [C] 3.99 A:1075 [G] sugar:BB 63.03
4:21 [GLY] A:1168 [C] 4.87 A:1074 [G] 63.03
4:21 [GLY] A:2784 [A] 4.21 A:2774 [G] 63.03
4:22 [LYS] A:2768 [A] 3.97 A:2790 [G] 31.64
4:23 [VAL] A:1075 [G] 4.99 A:1167 [C] 39.98
4:23 [VAL] A:1076 [A] 3.67 A:1166 [G] 39.98
4:24 [MET] A:2769 [G] 4.93 A:2789 [U] 32.4
4:30 [PRO] A:2554 [C] 3.98 A:2563 [G] 12.74
4:30 [PRO] A:2555 [U] 4.13 A:2562 [G] 12.74
4:31 [LYS] A:2505 [A] 3.01 A:2499 [G] 62.43
4:31 [LYS] A:2554 [C] 4.31 A:2563 [G] 62.43
4:31 [LYS] A:2555 [U] 3.8 A:2562 [G] 62.43
4:31 [LYS] A:2556 [G] 3.64 A:2502 [C] base:SC 62.43
4:33 [LYS] A:2553 [G] 4.57 A:2564 [U] 76.76
4:33 [LYS] A:2770 [U] 3.4 A:2788 [A] 76.76
4:35 [ARG] A:2566 [C] 3.78 A:2551 [G] sugar:SC 64.26
4:35 [ARG] A:2768 [A] 3.25 A:2790 [G] 64.26
4:35 [ARG] A:2769 [G] 2.28 A:2789 [U] 64.26
4:36 [GLN] A:1074 [G] 4.35 A:1168 [C] 96.73
4:36 [GLN] A:1075 [G] 3.1 A:1167 [C] base:SC, base:SC 96.73
4:36 [GLN] A:1167 [C] 4.78 A:1075 [G] 96.73
4:36 [GLN] A:1168 [C] 3.55 A:1074 [G] 96.73
4:37 [GLY] A:1168 [C] 4.16 A:1074 [G] 47.5
4:37 [GLY] A:1169 [G] 3.91 A:1073 [A] 47.5

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group81 6S0Z_4_A 4: 50s ribosomal protein l36, Staphylococcus aureus (natural) A: 23s ribosomal RNA, Staphylococcus aureus (natural) A0A077UGV8 Ribosomal protein L36 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0Z_4_A 7K00_3_a 0.93 0.97 1.51 0.65 Ribosomal protein L36 Bacterial large subunit ribosomal RNA compare
4Y4O_19_1A 6S0Z_4_A 0.89 0.97 1.62 0.74 Ribosomal protein L36 Bacterial large subunit ribosomal RNA compare
6S0Z_4_A 7RYG_3_A 0.77 0.98 2.04 0.67 Ribosomal protein L36 Bacterial large subunit ribosomal RNA compare
6S0Z_4_A 7OF0_4_A 0.47 0.96 3.71 0.26 Ribosomal protein L36 Bacterial large subunit ribosomal RNA compare