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All interfaces > All interologs > Interface groups > group81 > 7K00_3_a

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7K00_3
7K00_a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
3:1 [MET] a:2526 [G] 2.74 a:2537 [U] base:BB, base:BB, sugar:BB 89.71
3:1 [MET] a:2527 [C] 2.94 a:2536 [G] sugar:BB 89.71
3:1 [MET] a:2538 [C] 4.44 a:2525 [G] 89.71
3:1 [MET] a:2742 [G] 3.62 a:2762 [C] 89.71
3:1 [MET] a:2743 [U] 4.54 a:2761 [A] 89.71
3:2 [LYS] a:2477 [U] 4.1 90.49
3:2 [LYS] a:2478 [A] 2.3 a:2472 [G] 90.49
3:3 [VAL] a:2465 [C] 4.82 a:2485 [G] 57.79
3:3 [VAL] a:2538 [C] 3.77 a:2525 [G] 57.79
3:3 [VAL] a:2539 [C] 3.84 a:2524 [G] 57.79
3:4 [ARG] a:2465 [C] 4.34 a:2485 [G] 57.19
3:4 [ARG] a:2466 [C] 3.27 a:2484 [G] 57.19
3:4 [ARG] a:2477 [U] 2.87 base:SC, base:SC 57.19
3:5 [ALA] a:1029 [A] 4.08 a:1125 [G] 47.16
3:5 [ALA] a:1030 [C] 4.67 a:1124 [G] 47.16
3:5 [ALA] a:1031 [G] 3.76 a:1123 [C] 47.16
3:5 [ALA] a:1124 [G] 3.32 a:1030 [C] base:BB 47.16
3:5 [ALA] a:1125 [G] 3.56 a:1029 [A] 47.16
3:5 [ALA] a:2465 [C] 3.42 a:2485 [G] 47.16
3:5 [ALA] a:2466 [C] 3.16 a:2484 [G] 47.16
3:6 [SER] a:1030 [C] 3.58 a:1124 [G] 91.96
3:6 [SER] a:1031 [G] 3.47 a:1123 [C] 91.96
3:6 [SER] a:2465 [C] 4.66 a:2485 [G] 91.96
3:6 [SER] a:2466 [C] 3.08 a:2484 [G] 91.96
3:6 [SER] a:2467 [C] 2.58 a:2483 [C] 91.96
3:7 [VAL] a:1031 [G] 2.74 a:1123 [C] sugar:BB, sugar:BB 71.49
3:7 [VAL] a:1032 [A] 3.45 a:1122 [G] 71.49
3:8 [LYS] a:1031 [G] 3.79 a:1123 [C] 68.04
3:8 [LYS] a:1032 [A] 3.84 a:1122 [G] 68.04
3:8 [LYS] a:2466 [C] 4.65 a:2484 [G] 68.04
3:8 [LYS] a:2467 [C] 2.24 a:2483 [C] 68.04
3:8 [LYS] a:2468 [A] 3.83 a:2482 [A] 68.04
3:10 [LEU] a:2477 [U] 3.65 62.75
3:15 [LYS] a:2753 [A] 3.77 a:2749 [A] 50.15
3:16 [ILE] a:1032 [A] 3.79 a:1122 [G] 29.59
3:16 [ILE] a:1033 [U] 4.42 29.59
3:17 [VAL] a:2754 [U] 4.05 a:2748 [A] 82.0
3:17 [VAL] a:2756 [U] 3.86 a:2758 [A] 82.0
3:18 [LYS] a:1034 [G] 3.1 a:1121 [C] sugar:SC 45.31
3:18 [LYS] a:1122 [G] 4.28 a:1032 [A] 45.31
3:18 [LYS] a:2756 [U] 3.93 a:2758 [A] 45.31
3:18 [LYS] a:2757 [A] 3.36 a:2747 [G] 45.31
3:19 [ARG] a:2754 [U] 3.01 a:2748 [A] 99.0
3:19 [ARG] a:2755 [C] 3.41 base/AA stacks 99.0
3:19 [ARG] a:2756 [U] 2.72 a:2758 [A] 99.0
3:19 [ARG] a:2757 [A] 3.59 a:2747 [G] 99.0
3:20 [ASP] a:2756 [U] 4.1 a:2758 [A] 29.69
3:20 [ASP] a:2757 [A] 2.97 a:2747 [G] 29.69
3:21 [GLY] a:1123 [C] 4.04 a:1031 [G] 62.68
3:21 [GLY] a:1124 [G] 4.66 a:1030 [C] 62.68
3:21 [GLY] a:2757 [A] 4.3 a:2747 [G] 62.68
3:23 [ILE] a:1031 [G] 4.73 a:1123 [C] 27.34
3:23 [ILE] a:1032 [A] 3.44 a:1122 [G] 27.34
3:24 [ARG] a:2742 [G] 2.83 a:2762 [C] 0.7
3:24 [ARG] a:2743 [U] 4.9 a:2761 [A] 0.7
3:26 [ILE] a:2754 [U] 4.34 a:2748 [A] 39.85
3:30 [GLU] a:2528 [U] 4.1 a:2535 [G] 68.65
3:31 [PRO] a:2527 [C] 3.79 a:2536 [G] 48.52
3:31 [PRO] a:2528 [U] 3.91 a:2535 [G] 48.52
3:32 [LYS] a:2478 [A] 3.28 a:2472 [G] 67.41
3:32 [LYS] a:2527 [C] 3.68 a:2536 [G] 67.41
3:32 [LYS] a:2528 [U] 3.51 a:2535 [G] 67.41
3:32 [LYS] a:2529 [G] 2.74 a:2475 [C] base:SC, base:SC 67.41
3:34 [LYS] a:2526 [G] 2.91 a:2537 [U] sugar:SC 78.2
3:34 [LYS] a:2527 [C] 3.93 a:2536 [G] 78.2
3:34 [LYS] a:2742 [G] 4.48 a:2762 [C] 78.2
3:34 [LYS] a:2743 [U] 2.55 a:2761 [A] 78.2
3:36 [ARG] a:2539 [C] 3.04 a:2524 [G] sugar:SC, sugar:SC 74.31
3:36 [ARG] a:2540 [C] 4.18 a:2523 [G] 74.31
3:36 [ARG] a:2741 [A] 3.03 a:2763 [G] 74.31
3:36 [ARG] a:2742 [G] 2.86 a:2762 [C] 74.31
3:37 [GLN] a:1031 [G] 2.83 a:1123 [C] base:SC, base:SC 85.63
3:37 [GLN] a:1032 [A] 4.96 a:1122 [G] 85.63
3:37 [GLN] a:1124 [G] 3.39 a:1030 [C] 85.63
3:38 [GLY] a:1124 [G] 4.06 a:1030 [C] 45.37
3:38 [GLY] a:1125 [G] 3.68 a:1029 [A] 45.37
3:38 [GLY] a:1126 [A] 4.92 a:1028 [A] 45.37
3:38 [GLY] a:2465 [C] 4.95 a:2485 [G] 45.37

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group81 7K00_3_a 3: 50s ribosomal protein l36, Escherichia coli (natural) a: 23s rRNA, Escherichia coli (natural) P0A7Q6 Ribosomal protein L36 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_19_1A 7K00_3_a 0.92 0.96 1.0 0.69 Ribosomal protein L36 Bacterial large subunit ribosomal RNA compare
6S0Z_4_A 7K00_3_a 0.93 0.97 1.51 0.65 Ribosomal protein L36 Bacterial large subunit ribosomal RNA compare
7K00_3_a 7RYG_3_A 0.75 0.99 2.49 0.71 Ribosomal protein L36 Bacterial large subunit ribosomal RNA compare
7K00_3_a 7OF0_4_A 0.65 0.93 2.82 0.38 Ribosomal protein L36 Bacterial large subunit ribosomal RNA compare