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All interfaces > All interologs > Interface groups > group81 > 7OF0_4_A

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

7OF0_4
7OF0_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
4:66 [PHE] A:3013 [G] 2.49 A:3024 [U] base:BB, base:BB, sugar:BB 86.98
4:66 [PHE] A:3014 [G] 3.91 A:3023 [C] 86.98
4:66 [PHE] A:3025 [A] 3.96 A:3012 [U] 86.98
4:66 [PHE] A:3174 [U] 3.62 A:3195 [A] 86.98
4:66 [PHE] A:3175 [A] 3.46 A:3194 [U] 86.98
4:67 [LYS] A:2964 [U] 4.91 99.0
4:67 [LYS] A:2966 [U] 3.58 A:2958 [A] 99.0
4:67 [LYS] A:3013 [G] 4.63 A:3024 [U] 99.0
4:67 [LYS] A:3024 [U] 4.63 A:3013 [G] 99.0
4:67 [LYS] A:3025 [A] 4.53 A:3012 [U] 99.0
4:68 [ASN] A:2952 [U] 4.84 A:2972 [A] 52.77
4:68 [ASN] A:2953 [U] 3.94 A:2971 [A] 52.77
4:68 [ASN] A:3025 [A] 3.71 A:3012 [U] 52.77
4:68 [ASN] A:3026 [U] 3.59 A:3011 [A] 52.77
4:69 [LYS] A:2953 [U] 3.97 A:2971 [A] 54.08
4:69 [LYS] A:2964 [U] 4.39 54.08
4:70 [THR] A:2160 [A] 3.16 base:BB 52.45
4:70 [THR] A:2228 [A] 4.52 52.45
4:70 [THR] A:2952 [U] 3.75 A:2972 [A] 52.45
4:70 [THR] A:2953 [U] 3.23 A:2971 [A] 52.45
4:71 [VAL] A:2160 [A] 3.92 79.47
4:71 [VAL] A:2953 [U] 4.59 A:2971 [A] 79.47
4:71 [VAL] A:2954 [C] 3.93 A:2970 [C] 79.47
4:72 [LEU] A:2160 [A] 3.13 base:BB 58.58
4:73 [LYS] A:2954 [C] 4.88 A:2970 [C] 56.39
4:74 [LYS] A:2161 [A] 4.91 34.87
4:74 [LYS] A:2162 [C] 3.46 34.87
4:75 [ARG] A:2964 [U] 3.06 base/AA stacks 70.53
4:75 [ARG] A:2965 [A] 4.15 A:2959 [G] 70.53
4:77 [LYS] A:2166 [C] 4.54 7.68
4:77 [LYS] A:2210 [C] 3.82 A:2201 [G] 7.68
4:77 [LYS] A:2211 [U] 2.64 A:2200 [A] 7.68
4:80 [TYR] A:3186 [U] 4.35 A:3180 [A] 33.2
4:80 [TYR] A:3187 [C] 3.85 33.2
4:81 [LEU] A:2160 [A] 3.97 37.42
4:81 [LEU] A:2161 [A] 4.01 37.42
4:81 [LEU] A:2162 [C] 4.39 37.42
4:82 [VAL] A:3186 [U] 3.31 A:3180 [A] 74.47
4:82 [VAL] A:3188 [U] 4.11 A:3191 [A] 74.47
4:83 [LYS] A:2159 [U] 4.52 52.16
4:83 [LYS] A:2160 [A] 2.62 52.16
4:83 [LYS] A:3188 [U] 3.6 A:3191 [A] 52.16
4:83 [LYS] A:3189 [C] 3.37 52.16
4:83 [LYS] A:3190 [A] 3.69 A:3179 [G] 52.16
4:84 [ARG] A:3175 [A] 4.98 A:3194 [U] 98.58
4:84 [ARG] A:3186 [U] 2.82 A:3180 [A] 98.58
4:84 [ARG] A:3187 [C] 3.08 base/AA stacks 98.58
4:84 [ARG] A:3188 [U] 2.28 A:3191 [A] 98.58
4:84 [ARG] A:3189 [C] 3.15 98.58
4:85 [ARG] A:3174 [U] 3.27 A:3195 [A] 29.96
4:85 [ARG] A:3175 [A] 4.52 A:3194 [U] 29.96
4:85 [ARG] A:3187 [C] 3.16 base:SC, base:SC 29.96
4:85 [ARG] A:3188 [U] 4.74 A:3191 [A] 29.96
4:85 [ARG] A:3189 [C] 2.28 29.96
4:86 [GLY] A:3189 [C] 3.3 73.44
4:87 [ARG] A:3174 [U] 4.44 A:3195 [A] 44.52
4:88 [TRP] A:2160 [A] 3.23 base/AA stacks 0.0
4:88 [TRP] A:2161 [A] 4.31 0.0
4:89 [TYR] A:3173 [G] 4.65 A:3196 [G] 39.27
4:89 [TYR] A:3174 [U] 2.38 A:3195 [A] 39.27
4:91 [TYR] A:3174 [U] 4.57 A:3195 [A] 26.47
4:91 [TYR] A:3175 [A] 2.44 A:3194 [U] 26.47
4:91 [TYR] A:3187 [C] 3.49 26.47
4:96 [PRO] A:3014 [G] 3.3 A:3023 [C] 58.94
4:96 [PRO] A:3015 [U] 3.63 A:3022 [G] 58.94
4:97 [ARG] A:2965 [A] 3.22 A:2959 [G] 81.4
4:97 [ARG] A:3014 [G] 3.26 A:3023 [C] 81.4
4:97 [ARG] A:3015 [U] 3.38 A:3022 [G] 81.4
4:97 [ARG] A:3016 [G] 3.04 A:2962 [C] 81.4
4:99 [LYS] A:3013 [G] 3.2 A:3024 [U] 95.29
4:99 [LYS] A:3014 [G] 3.84 A:3023 [C] 95.29
4:99 [LYS] A:3174 [U] 4.7 A:3195 [A] 95.29
4:99 [LYS] A:3175 [A] 2.44 A:3194 [U] 95.29
4:101 [ARG] A:3025 [A] 4.26 A:3012 [U] 62.71
4:101 [ARG] A:3026 [U] 3.41 A:3011 [A] 62.71
4:101 [ARG] A:3173 [G] 4.07 A:3196 [G] 62.71
4:101 [ARG] A:3174 [U] 3.03 A:3195 [A] 62.71
4:102 [GLN] A:2159 [U] 4.64 94.23
4:102 [GLN] A:2160 [A] 3.24 base:SC 94.23

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group81 7OF0_4_A 4: 39s ribosomal protein l36, mitochondrial, Homo sapiens (natural) A: 16s ribosomal RNA, Homo sapiens (natural) Q9P0J6 Ribosomal protein L36 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0Z_4_A 7OF0_4_A 0.47 0.96 3.71 0.26 Ribosomal protein L36 Bacterial large subunit ribosomal RNA compare
4Y4O_19_1A 7OF0_4_A 0.50 0.97 3.13 0.33 Ribosomal protein L36 Bacterial large subunit ribosomal RNA compare
7K00_3_a 7OF0_4_A 0.65 0.93 2.82 0.38 Ribosomal protein L36 Bacterial large subunit ribosomal RNA compare
7OF0_4_A 7RYG_3_A 0.47 0.93 2.63 0.33 Ribosomal protein L36 Bacterial large subunit ribosomal RNA compare