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All interfaces > All interologs > Interface groups > group83 > 4Y4O_1V_1A

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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

4Y4O_1V
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1V:6 [LYS] 1A:1206 [G] 4.32 1A:1040 [C] 0.0
1V:8 [GLY] 1A:1206 [G] 4.04 1A:1040 [C] 0.0
1V:8 [GLY] 1A:1207 [C] 3.16 1A:1039 [G] 0.0
1V:9 [GLY] 1A:1042 [A] 3.42 1A:1205 [U] 0.0
1V:9 [GLY] 1A:1206 [G] 3.18 1A:1040 [C] base:BB 0.0
1V:9 [GLY] 1A:1207 [C] 3.37 1A:1039 [G] 0.0
1V:10 [LYS] 1A:1039 [G] 4.22 1A:1207 [C] 0.0
1V:10 [LYS] 1A:1040 [C] 2.94 1A:1206 [G] base:SC 0.0
1V:10 [LYS] 1A:1042 [A] 3.64 1A:1205 [U] 0.0
1V:10 [LYS] 1A:1206 [G] 3.79 1A:1040 [C] 0.0
1V:10 [LYS] 1A:1207 [C] 3.67 1A:1039 [G] base:SC 0.0
1V:11 [GLN] 1A:1042 [A] 4.43 1A:1205 [U] 0.0
1V:17 [GLY] 1A:572 [A] 3.36 base:BB 0.0
1V:18 [LEU] 1A:572 [A] 3.39 0.0
1V:19 [LYS] 1A:572 [A] 2.79 base:SC 0.0
1V:23 [GLU] 1A:1039 [G] 3.07 1A:1207 [C] base:SC 0.0
1V:23 [GLU] 1A:1040 [C] 4.4 1A:1206 [G] 0.0
1V:23 [GLU] 1A:1207 [C] 3.22 1A:1039 [G] 0.0
1V:23 [GLU] 1A:1208 [G] 3.67 1A:1038 [C] 0.0
1V:24 [LYS] 1A:1208 [G] 3.51 1A:1038 [C] 0.0
1V:24 [LYS] 1A:1209 [G] 3.21 1A:1037 [C] 0.0
1V:66 [ARG] 1A:1268 [C] 4.38 1A:1273 [G] 0.0
1V:66 [ARG] 1A:1269 [G] 2.93 1A:1272 [A] 0.0
1V:66 [ARG] 1A:1270 [C] 4.17 0.0
1V:69 [LYS] 1A:1269 [G] 3.14 1A:1272 [A] 0.0
1V:69 [LYS] 1A:1270 [C] 4.55 0.0
1V:69 [LYS] 1A:1271 [G] 2.57 0.0
1V:70 [ILE] 1A:1039 [G] 4.09 1A:1207 [C] 0.0
1V:70 [ILE] 1A:1040 [C] 4.44 1A:1206 [G] 0.0
1V:71 [LEU] 1A:1271 [G] 4.85 0.0
1V:72 [VAL] 1A:1038 [C] 3.82 1A:1208 [G] 0.0
1V:72 [VAL] 1A:1039 [G] 4.46 1A:1207 [C] 0.0
1V:74 [LYS] 1A:1036 [A] 4.72 1A:1019 [G] 83.96
1V:74 [LYS] 1A:1037 [C] 3.06 1A:1209 [G] 83.96
1V:74 [LYS] 1A:1038 [C] 2.76 1A:1208 [G] 83.96
1V:75 [PHE] 1A:587 [C] 3.26 1A:600 [G] 52.29
1V:75 [PHE] 1A:588 [C] 3.76 1A:599 [U] 52.29
1V:76 [LYS] 1A:588 [C] 4.61 1A:599 [U] 73.02
1V:76 [LYS] 1A:1019 [G] 3.77 1A:1036 [A] 73.02
1V:76 [LYS] 1A:1021 [G] 3.56 1A:1035 [G] sugar:SC 73.02
1V:76 [LYS] 1A:1036 [A] 3.01 1A:1019 [G] base:SC 73.02
1V:76 [LYS] 1A:1231 [G] 3.95 73.02
1V:76 [LYS] 1A:1232 [G] 4.4 73.02
1V:77 [ALA] 1A:587 [C] 3.59 1A:600 [G] 71.56
1V:77 [ALA] 1A:588 [C] 3.38 1A:599 [U] 71.56
1V:77 [ALA] 1A:595 [A] 4.94 71.56
1V:77 [ALA] 1A:1021 [G] 4.72 1A:1035 [G] 71.56
1V:78 [LYS] 1A:587 [C] 3.98 1A:600 [G] 89.29
1V:78 [LYS] 1A:588 [C] 2.75 1A:599 [U] 89.29
1V:78 [LYS] 1A:589 [U] 3.09 1A:598 [A] 89.29
1V:78 [LYS] 1A:590 [A] 4.02 1A:2052 [A] 89.29
1V:78 [LYS] 1A:594 [A] 3.26 89.29
1V:78 [LYS] 1A:595 [A] 2.63 89.29
1V:78 [LYS] 1A:596 [G] 2.77 89.29
1V:78 [LYS] 1A:598 [A] 4.46 1A:589 [U] 89.29
1V:79 [VAL] 1A:588 [C] 4.9 1A:599 [U] 80.2
1V:79 [VAL] 1A:589 [U] 4.51 1A:598 [A] 80.2
1V:79 [VAL] 1A:1018 [A] 3.58 1A:867 [A] 80.2
1V:79 [VAL] 1A:1019 [G] 4.02 1A:1036 [A] 80.2
1V:79 [VAL] 1A:1233 [U] 3.59 1A:866 [A] 80.2
1V:80 [GLN] 1A:588 [C] 3.18 1A:599 [U] 60.31
1V:80 [GLN] 1A:589 [U] 2.98 1A:598 [A] 60.31
1V:80 [GLN] 1A:1299 [A] 4.84 60.31
1V:81 [TYR] 1A:1231 [G] 3.83 62.23
1V:81 [TYR] 1A:1232 [G] 2.62 62.23
1V:81 [TYR] 1A:1233 [U] 4.21 1A:866 [A] 62.23
1V:82 [ARG] 1A:587 [C] 4.02 1A:600 [G] 69.37
1V:82 [ARG] 1A:588 [C] 2.86 1A:599 [U] 69.37
1V:82 [ARG] 1A:861 [C] 3.71 1A:1238 [G] 69.37
1V:82 [ARG] 1A:1299 [A] 4.76 69.37
1V:83 [ARG] 1A:861 [C] 3.35 1A:1238 [G] 75.44
1V:83 [ARG] 1A:862 [C] 3.24 1A:1237 [G] 75.44
1V:83 [ARG] 1A:1232 [G] 4.43 75.44
1V:84 [LYS] 1A:861 [C] 2.95 1A:1238 [G] 59.66
1V:84 [LYS] 1A:1270 [C] 3.84 sugar:BB 59.66
1V:84 [LYS] 1A:1271 [G] 3.52 59.66
1V:84 [LYS] 1A:1272 [A] 2.75 1A:1269 [G] 59.66
1V:85 [LYS] 1A:862 [C] 4.15 1A:1237 [G] 0.0
1V:85 [LYS] 1A:1037 [C] 3.97 1A:1209 [G] 0.0
1V:85 [LYS] 1A:1038 [C] 3.96 1A:1208 [G] 0.0
1V:85 [LYS] 1A:1270 [C] 3.25 0.0
1V:85 [LYS] 1A:1271 [G] 4.29 0.0
1V:86 [GLY] 1A:1270 [C] 2.98 sugar:BB 0.0
1V:86 [GLY] 1A:1271 [G] 3.33 0.0
1V:87 [HIS] 1A:1038 [C] 3.11 1A:1208 [G] 0.0
1V:87 [HIS] 1A:1039 [G] 3.02 1A:1207 [C] 0.0
1V:87 [HIS] 1A:1208 [G] 3.8 1A:1038 [C] 0.0
1V:88 [ARG] 1A:1267 [C] 4.88 1A:1274 [G] 0.0
1V:88 [ARG] 1A:1268 [C] 3.12 1A:1273 [G] 0.0
1V:89 [GLN] 1A:1038 [C] 4.99 1A:1208 [G] 0.0
1V:89 [GLN] 1A:1039 [G] 3.45 1A:1207 [C] 0.0
1V:89 [GLN] 1A:1208 [G] 3.08 1A:1038 [C] base:SC, base:SC 0.0
1V:90 [PRO] 1A:1208 [G] 3.86 1A:1038 [C] 0.0
1V:90 [PRO] 1A:1209 [G] 3.84 1A:1037 [C] 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group83 4Y4O_1V_1A 1V: 50s ribosomal protein l21, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) P60492 Ribosomal protein L21p Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1V_1A 6S0Z_P_A 0.70 0.97 0.88 0.61 Ribosomal protein L21p Bacterial large subunit ribosomal RNA compare
4Y4O_1V_1A 7K00_q_a 0.83 0.96 1.09 0.57 Ribosomal protein L21p Bacterial large subunit ribosomal RNA compare
4Y4O_1V_1A 7OF0_S_A 0.68 0.94 1.38 0.13 Ribosomal protein L21p Bacterial large subunit ribosomal RNA compare
4Y4O_1V_1A 7RYG_Q_A 0.88 0.96 1.48 0.52 Ribosomal protein L21p Bacterial large subunit ribosomal RNA compare