RNAprotDB

All interfaces > All interologs > Interface groups > group83 > 6S0Z_P_A

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

6S0Z_P
6S0Z_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
P:8 [GLY] A:1204 [G] 4.33 A:1038 [C] 0.0
P:8 [GLY] A:1205 [U] 3.33 A:1037 [A] 0.0
P:9 [GLY] A:1040 [A] 3.33 A:1203 [U] 0.0
P:9 [GLY] A:1204 [G] 3.54 A:1038 [C] 0.0
P:9 [GLY] A:1205 [U] 3.27 A:1037 [A] 0.0
P:10 [LYS] A:1038 [C] 3.28 A:1204 [G] base:SC 0.0
P:10 [LYS] A:1040 [A] 3.61 A:1203 [U] 0.0
P:10 [LYS] A:1204 [G] 4.15 A:1038 [C] 0.0
P:10 [LYS] A:1205 [U] 4.78 A:1037 [A] 0.0
P:11 [GLN] A:1040 [A] 4.99 A:1203 [U] 0.0
P:21 [PHE] A:593 [U] 3.41 base/AA stacks 0.0
P:23 [GLU] A:1037 [A] 4.49 A:1205 [U] 0.0
P:23 [GLU] A:1038 [C] 4.89 A:1204 [G] 0.0
P:23 [GLU] A:1205 [U] 3.85 A:1037 [A] 0.0
P:23 [GLU] A:1206 [G] 3.71 A:1036 [C] 0.0
P:24 [LYS] A:1206 [G] 3.4 A:1036 [C] 0.0
P:24 [LYS] A:1207 [G] 2.67 A:1035 [C] 0.0
P:64 [LYS] A:593 [U] 2.9 0.0
P:67 [ARG] A:593 [U] 3.39 0.0
P:67 [ARG] A:1260 [C] 4.68 A:1265 [G] 0.0
P:67 [ARG] A:1261 [G] 2.29 A:1264 [A] 0.0
P:67 [ARG] A:1262 [U] 3.27 0.0
P:68 [GLY] A:593 [U] 4.92 0.0
P:69 [LYS] A:594 [G] 3.64 A:587 [C] 0.0
P:69 [LYS] A:595 [G] 3.5 A:586 [C] 0.0
P:70 [LYS] A:1261 [G] 3.15 A:1264 [A] 0.0
P:70 [LYS] A:1262 [U] 4.08 0.0
P:70 [LYS] A:1263 [A] 2.86 0.0
P:71 [ILE] A:1037 [A] 3.94 A:1205 [U] 0.0
P:73 [VAL] A:1036 [C] 3.57 A:1206 [G] 0.0
P:73 [VAL] A:1037 [A] 3.67 A:1205 [U] 0.0
P:76 [TYR] A:606 [G] 4.32 A:621 [A] 0.0
P:76 [TYR] A:607 [C] 3.07 A:620 [G] 0.0
P:77 [LYS] A:608 [C] 4.7 A:619 [U] 0.0
P:77 [LYS] A:1018 [A] 3.87 A:1034 [A] 0.0
P:77 [LYS] A:1019 [A] 3.64 A:1033 [G] sugar:SC 0.0
P:77 [LYS] A:1034 [A] 3.0 A:1018 [A] base:SC 0.0
P:77 [LYS] A:1225 [G] 4.66 0.0
P:78 [ARG] A:605 [U] 4.79 0.0
P:78 [ARG] A:606 [G] 2.49 A:621 [A] 0.0
P:78 [ARG] A:607 [C] 2.95 A:620 [G] 0.0
P:78 [ARG] A:608 [C] 2.62 A:619 [U] 0.0
P:78 [ARG] A:615 [A] 3.54 0.0
P:79 [ARG] A:607 [C] 4.98 A:620 [G] 0.0
P:79 [ARG] A:608 [C] 3.64 A:619 [U] 0.0
P:79 [ARG] A:609 [U] 3.07 A:618 [A] 0.0
P:79 [ARG] A:610 [U] 3.54 0.0
P:79 [ARG] A:614 [U] 3.04 0.0
P:79 [ARG] A:615 [A] 2.49 0.0
P:79 [ARG] A:616 [G] 3.95 0.0
P:80 [LYS] A:609 [U] 4.98 A:618 [A] 0.0
P:80 [LYS] A:611 [U] 3.6 A:2057 [A] base:SC 0.0
P:80 [LYS] A:614 [U] 4.71 0.0
P:80 [LYS] A:1016 [G] 4.74 A:866 [A] 0.0
P:80 [LYS] A:1017 [A] 3.2 A:865 [A] 0.0
P:80 [LYS] A:1018 [A] 4.29 A:1034 [A] 0.0
P:80 [LYS] A:1227 [U] 3.94 A:1226 [G] 0.0
P:81 [ASN] A:608 [C] 4.76 A:619 [U] 0.0
P:81 [ASN] A:609 [U] 2.94 A:618 [A] 0.0
P:81 [ASN] A:1227 [U] 4.42 A:1226 [G] 0.0
P:82 [SER] A:1226 [G] 4.0 A:1227 [U] 0.0
P:82 [SER] A:1227 [U] 3.79 A:1226 [G] 0.0
P:83 [LYS] A:858 [U] 2.58 A:1233 [A] 0.0
P:83 [LYS] A:859 [C] 4.08 A:1232 [G] 0.0
P:84 [ARG] A:859 [C] 3.48 A:1232 [G] 0.0
P:84 [ARG] A:860 [U] 3.57 A:1231 [A] 0.0
P:84 [ARG] A:1035 [C] 2.99 A:1207 [G] sugar:SC 0.0
P:84 [ARG] A:1036 [C] 3.16 A:1206 [G] 0.0
P:85 [LYS] A:858 [U] 4.98 A:1233 [A] 0.0
P:85 [LYS] A:859 [C] 2.93 A:1232 [G] 0.0
P:85 [LYS] A:1262 [U] 4.69 0.0
P:85 [LYS] A:1263 [A] 3.76 0.0
P:85 [LYS] A:1264 [A] 2.91 A:1261 [G] 0.0
P:86 [LYS] A:860 [U] 4.45 A:1231 [A] 0.0
P:86 [LYS] A:1035 [C] 3.36 A:1207 [G] sugar:SC 0.0
P:86 [LYS] A:1036 [C] 3.88 A:1206 [G] 0.0
P:86 [LYS] A:1262 [U] 3.61 0.0
P:86 [LYS] A:1263 [A] 4.46 0.0
P:87 [GLY] A:1262 [U] 3.09 sugar:BB 0.0
P:87 [GLY] A:1263 [A] 4.0 0.0
P:88 [HIS] A:1036 [C] 3.31 A:1206 [G] 0.0
P:88 [HIS] A:1037 [A] 3.64 A:1205 [U] 0.0
P:88 [HIS] A:1206 [G] 3.91 A:1036 [C] 0.0
P:88 [HIS] A:1207 [G] 4.83 A:1035 [C] 0.0
P:89 [ARG] A:1260 [C] 3.72 A:1265 [G] 0.0
P:89 [ARG] A:1261 [G] 2.53 A:1264 [A] 0.0
P:90 [GLN] A:1036 [C] 4.73 A:1206 [G] 0.0
P:90 [GLN] A:1037 [A] 3.41 A:1205 [U] base/AA stacks 0.0
P:90 [GLN] A:1206 [G] 3.2 A:1036 [C] base:SC, base:SC 0.0
P:91 [PRO] A:1206 [G] 4.08 A:1036 [C] 0.0
P:91 [PRO] A:1207 [G] 4.3 A:1035 [C] 0.0
P:92 [TYR] A:592 [A] 4.96 0.0
P:92 [TYR] A:593 [U] 3.13 0.0

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group83 6S0Z_P_A P: 50s ribosomal protein l21, Staphylococcus aureus (natural) A: 23s ribosomal RNA, Staphylococcus aureus (natural) D7URR3 Ribosomal protein L21p Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1V_1A 6S0Z_P_A 0.70 0.97 0.88 0.61 Ribosomal protein L21p Bacterial large subunit ribosomal RNA compare
6S0Z_P_A 7K00_q_a 0.80 0.97 1.18 0.54 Ribosomal protein L21p Bacterial large subunit ribosomal RNA compare
6S0Z_P_A 7OF0_S_A 0.60 0.93 1.6 0.23 Ribosomal protein L21p Bacterial large subunit ribosomal RNA compare
6S0Z_P_A 7RYG_Q_A 0.76 0.98 0.84 0.52 Ribosomal protein L21p Bacterial large subunit ribosomal RNA compare