RNAprotDB

All interfaces > All interologs > Interface groups > group83 > 7OF0_S_A

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7OF0_S
7OF0_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
S:56 [LEU] A:2242 [U] 3.48 47.41
S:60 [PRO] A:2242 [U] 4.88 48.31
S:60 [PRO] A:2243 [A] 3.36 48.31
S:61 [TRP] A:2243 [A] 3.37 3.96
S:61 [TRP] A:2244 [U] 3.12 base/AA stacks 3.96
S:62 [PRO] A:2243 [A] 3.51 32.71
S:100 [HIS] A:2255 [C] 4.7 A:2145 [G] 49.4
S:102 [ALA] A:2256 [U] 3.19 A:2144 [A] 40.19
S:103 [SER] A:2145 [G] 2.84 A:2255 [C] base:SC 77.98
S:103 [SER] A:2147 [G] 4.15 A:2254 [C] 77.98
S:103 [SER] A:2255 [C] 2.69 A:2145 [G] base:SC 77.98
S:103 [SER] A:2256 [U] 3.21 A:2144 [A] 77.98
S:104 [ARG] A:2144 [A] 4.34 A:2256 [U] 67.17
S:104 [ARG] A:2145 [G] 2.69 A:2255 [C] base:SC, sugar:SC 67.17
S:104 [ARG] A:2146 [A] 4.79 67.17
S:104 [ARG] A:2147 [G] 3.12 A:2254 [C] 67.17
S:104 [ARG] A:2256 [U] 3.58 A:2144 [A] base:SC 67.17
S:105 [GLN] A:2147 [G] 4.75 A:2254 [C] 95.04
S:117 [GLY] A:2144 [A] 4.97 A:2256 [U] 32.58
S:117 [GLY] A:2257 [C] 4.91 A:2143 [G] 32.58
S:118 [ASN] A:2256 [U] 2.23 A:2144 [A] sugar:SC 33.99
S:118 [ASN] A:2257 [C] 3.07 A:2143 [G] sugar:SC 33.99
S:119 [GLU] A:2257 [C] 4.86 A:2143 [G] 18.88
S:119 [GLU] A:2258 [A] 4.74 18.88
S:167 [TRP] A:1831 [G] 4.89 A:1839 [C] 35.49
S:169 [ARG] A:1832 [A] 4.66 54.19
S:169 [ARG] A:2144 [A] 3.11 A:2256 [U] 54.19
S:169 [ARG] A:2145 [G] 3.21 A:2255 [C] 54.19
S:171 [ILE] A:2143 [G] 3.57 A:2257 [C] 51.9
S:171 [ILE] A:2144 [A] 4.12 A:2256 [U] 51.9
S:173 [ARG] A:2142 [A] 3.3 64.68
S:173 [ARG] A:2143 [G] 2.93 A:2257 [C] 64.68
S:173 [ARG] A:2261 [C] 4.55 64.68
S:173 [ARG] A:2262 [C] 2.89 base/AA stacks 64.68
S:174 [PHE] A:1845 [C] 3.64 A:1858 [G] 38.03
S:174 [PHE] A:1846 [C] 3.69 A:1857 [U] 38.03
S:175 [ARG] A:1846 [C] 4.49 A:1857 [U] 51.74
S:175 [ARG] A:2125 [C] 3.4 51.74
S:175 [ARG] A:2126 [U] 3.36 A:2139 [U] 51.74
S:175 [ARG] A:2262 [C] 2.89 base:SC, sugar:SC 51.74
S:175 [ARG] A:2263 [C] 3.61 A:2029 [A] sugar:SC 51.74
S:176 [LYS] A:1843 [U] 4.07 A:2696 [A] 70.78
S:176 [LYS] A:1844 [A] 4.46 A:1859 [A] 70.78
S:176 [LYS] A:1845 [C] 3.16 A:1858 [G] 70.78
S:176 [LYS] A:1846 [C] 3.5 A:1857 [U] 70.78
S:176 [LYS] A:1852 [C] 4.99 A:1849 [C] 70.78
S:177 [ARG] A:1845 [C] 4.9 A:1858 [G] 82.93
S:177 [ARG] A:1846 [C] 2.74 A:1857 [U] 82.93
S:177 [ARG] A:1847 [U] 3.62 A:1856 [A] 82.93
S:177 [ARG] A:1848 [U] 2.65 A:1855 [A] base:SC 82.93
S:177 [ARG] A:1849 [C] 2.92 A:1852 [C] base:SC 82.93
S:177 [ARG] A:1852 [C] 2.66 A:1849 [C] 82.93
S:177 [ARG] A:1855 [A] 3.37 A:1848 [U] 82.93
S:178 [LYS] A:1846 [C] 4.7 A:1857 [U] 69.69
S:178 [LYS] A:1847 [U] 4.59 A:1856 [A] 69.69
S:178 [LYS] A:1851 [G] 4.44 69.69
S:178 [LYS] A:2124 [A] 3.36 A:2030 [U] sugar:SC 69.69
S:178 [LYS] A:2125 [C] 3.13 69.69
S:178 [LYS] A:2264 [A] 3.7 69.69
S:178 [LYS] A:2265 [A] 4.94 A:2028 [G] 69.69
S:179 [ASN] A:1846 [C] 4.69 A:1857 [U] 47.43
S:179 [ASN] A:1847 [U] 4.8 A:1856 [A] 47.43
S:179 [ASN] A:2265 [A] 4.67 A:2028 [G] 47.43
S:180 [PHE] A:2262 [C] 3.93 33.12
S:180 [PHE] A:2263 [C] 3.19 A:2029 [A] 33.12
S:180 [PHE] A:2264 [A] 4.27 33.12
S:181 [LYS] A:2023 [U] 4.68 A:2270 [A] 60.3
S:181 [LYS] A:2024 [C] 3.9 A:2269 [G] 60.3
S:181 [LYS] A:2296 [U] 2.8 base:SC 60.3
S:182 [LYS] A:2024 [C] 3.32 A:2269 [G] 67.67
S:182 [LYS] A:2025 [C] 2.91 A:2268 [G] 67.67
S:182 [LYS] A:2026 [A] 4.29 A:2267 [U] 67.67
S:182 [LYS] A:2261 [C] 3.94 67.67
S:182 [LYS] A:2262 [C] 2.76 67.67
S:182 [LYS] A:2263 [C] 4.05 A:2029 [A] 67.67
S:183 [LYS] A:2023 [U] 4.76 A:2270 [A] 27.11
S:183 [LYS] A:2024 [C] 2.72 A:2269 [G] 27.11
S:184 [ARG] A:2143 [G] 3.65 A:2257 [C] 31.71
S:184 [ARG] A:2261 [C] 2.5 sugar:SC base/AA stacks 31.71
S:186 [VAL] A:2143 [G] 3.73 A:2257 [C] 61.71
S:186 [VAL] A:2144 [A] 4.54 A:2256 [U] 61.71
S:188 [THR] A:2144 [A] 3.59 A:2256 [U] sugar:SC 60.7
S:189 [PRO] A:2257 [C] 4.59 A:2143 [G] 11.63

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group83 7OF0_S_A S: 39s ribosomal protein l21, mitochondrial, Homo sapiens (natural) A: 16s ribosomal RNA, Homo sapiens (natural) Q7Z2W9 Ribosomal protein L21p Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1V_1A 7OF0_S_A 0.68 0.94 1.38 0.13 Ribosomal protein L21p Bacterial large subunit ribosomal RNA compare
6S0Z_P_A 7OF0_S_A 0.60 0.93 1.6 0.23 Ribosomal protein L21p Bacterial large subunit ribosomal RNA compare
7OF0_S_A 7RYG_Q_A 0.67 0.9 1.86 0.21 Ribosomal protein L21p Bacterial large subunit ribosomal RNA compare