RNAprotDB

All interfaces > All interologs > Interface groups > group84 > 6S0X_b_a vs 7K00_B_A

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

6S0X_b
6S0X_a
7K00_B
7K00_A
Conserved?
b:20 [THR] a:838 [G] B:20 [THR] A:830 [G] ✔
b:178 [LYS] a:1086 [U] B:178 [ASN] A:1075 [U] ✔
b:25 [PRO] a:836 [A] B:25 [PRO] A:828 [U] ✔
b:106 [THR] a:1083 [G] B:106 [THR] A:1072 [G] ✔
b:106 [THR] a:1084 [U] B:106 [THR] A:1073 [U] ✔
b:106 [THR] a:1114 [C] B:106 [THR] A:1103 [C] ✔
b:98 [GLY] a:1085 [G] B:98 [GLY] A:1074 [G] ✔
b:98 [GLY] a:1112 [A] B:98 [GLY] A:1101 [A] ✔
b:98 [GLY] a:1113 [A] B:98 [GLY] A:1102 [A] ✔
b:107 [ILE] a:1114 [C] B:107 [VAL] A:1103 [C] ✔
b:99 [GLY] a:1085 [G] B:99 [GLY] A:1074 [G] ✔
b:99 [GLY] a:1112 [A] B:99 [GLY] A:1101 [A] ✔
b:103 [ASN] a:1084 [U] B:103 [ASN] A:1073 [U] ✔
b:103 [ASN] a:1085 [G] B:103 [ASN] A:1074 [G] ✔
b:110 [ARG] a:1115 [G] B:110 [SER] A:1104 [G] ✔
b:139 [LYS] a:1108 [C] B:139 [ARG] A:1097 [C] ✔
b:139 [LYS] a:1109 [C] B:139 [ARG] A:1098 [C] ✔
b:171 [ASN] a:1112 [A] B:171 [ILE] A:1101 [A] ✔
b:105 [LYS] a:1084 [U] B:105 [LYS] A:1073 [U] ✔
b:96 [TRP] a:1112 [A] B:96 [TRP] A:1101 [A] ✔
b:21 [ARG] a:838 [G] B:21 [ARG] A:830 [G] ✔
b:21 [ARG] a:839 [U] B:21 [ARG] A:831 [A] ✔
b:97 [LEU] a:1113 [A] B:97 [LEU] A:1102 [A] ✔
b:102 [THR] a:1085 [G] B:102 [THR] A:1074 [G] ✔
b:102 [THR] a:1086 [U] B:102 [THR] A:1075 [U] ✔
b:95 [ARG] a:1111 [C] B:95 [ARG] A:1100 [C] ✔
b:95 [ARG] a:1112 [A] B:95 [ARG] A:1101 [A] ✔
b:95 [ARG] a:1113 [A] B:95 [ARG] A:1102 [A] ✔
b:23 [TRP] a:837 [A] B:23 [TRP] A:829 [G] ✔
b:178 [LYS] a:1085 [G] B:178 [ASN] A:1074 [G] ❌ 7K00_B_A
b:178 [LYS] a:1087 [C] B:178 [ASN] A:1076 [U] ❌ 7K00_B_A
b:107 [ILE] a:1113 [A] B:107 [VAL] A:1102 [A] ❌ 7K00_B_A
b:143 [ARG] a:1114 [C] B:143 [LYS] A:1103 [C] ❌ 7K00_B_A
b:110 [ARG] a:1114 [C] B:110 [SER] A:1103 [C] ❌ 7K00_B_A
b:97 [LEU] a:1112 [A] B:97 [LEU] A:1101 [A] ❌ 7K00_B_A
b:102 [THR] a:1112 [A] B:102 [THR] A:1101 [A] ❌ 6S0X_b_a
b:103 [ASN] a:1114 [C] B:103 [ASN] A:1103 [C] ❌ 6S0X_b_a
b:103 [ASN] a:1083 [G] B:103 [ASN] A:1072 [G] ❌ 6S0X_b_a
b:103 [ASN] a:1113 [A] B:103 [ASN] A:1102 [A] ❌ 6S0X_b_a
b:105 [LYS] a:1085 [G] B:105 [LYS] A:1074 [G] ❌ 6S0X_b_a
b:106 [THR] a:1115 [G] B:106 [THR] A:1104 [G] ❌ 6S0X_b_a
b:143 [ARG] a:1115 [G] B:143 [LYS] A:1104 [G] ❌ 6S0X_b_a
b:23 [TRP] a:838 [G] B:23 [TRP] A:830 [G] ❌ 6S0X_b_a
b:25 [PRO] a:837 [A] B:25 [PRO] A:829 [G] ❌ 6S0X_b_a
b:95 [ARG] a:1114 [C] B:95 [ARG] A:1103 [C] ❌ 6S0X_b_a
b:97 [LEU] a:1114 [C] B:97 [LEU] A:1103 [C] ❌ 6S0X_b_a
b:98 [GLY] a:1114 [C] B:98 [GLY] A:1103 [C] ❌ 6S0X_b_a
b:136 [GLU] a:1107 [C] B:136 [MET] A:1096 [C] ❌ 7K00_B:136, 7K00_A:1096 no longer at interface
b:131 [LYS] a:1170 [G] B:131 [LYS] A:1160 [G] ❌ 6S0X_b:131, 6S0X_a:1170 no longer at interface
b:132 [LYS] a:1170 [G] B:132 [LYS] A:1160 [G] ❌ 6S0X_b:132, 6S0X_a:1170 no longer at interface
b:132 [LYS] a:1168 [C] B:132 [LYS] A:1158 [C] ❌ 6S0X_b:132, 6S0X_a:1168 no longer at interface
b:132 [LYS] a:1169 [U] B:132 [LYS] A:1159 [U] ❌ 6S0X_b:132, 6S0X_a:1169 no longer at interface
b:139 [LYS] a:1180 [A] B:139 [ARG] A:1170 [A] ❌ 6S0X_a:1180 no longer at interface
b:139 [LYS] a:1179 [A] B:139 [ARG] A:1169 [A] ❌ 6S0X_a:1179 no longer at interface
b:21 [ARG] a:840 [G] B:21 [ARG] A:832 [G] ❌ 6S0X_a:840 no longer at interface
b:26 [LYS] a:868 [C] B:26 [LYS] A:859 [G] ❌ 6S0X_b:26, 6S0X_a:868 no longer at interface
b:37 [GLY] a:857 [C] B:37 [LYS] A:848 [C] ❌ 6S0X_b:37, 6S0X_a:857 no longer at interface
b:37 [GLY] a:856 [C] B:37 [LYS] A:847 [G] ❌ 6S0X_b:37, 6S0X_a:856 no longer at interface
b:113 [ARG] a:1114 [C] B:113 [ARG] A:1103 [C] ❌ 7K00_B:113 no longer at interface
b:113 [ARG] a:1115 [G] B:113 [ARG] A:1104 [G] ❌ 7K00_B:113 no longer at interface
b:136 [GLU] a:1108 [C] B:136 [MET] A:1097 [C] ❌ 7K00_B:136 no longer at interface
b:109 [LYS] a:1115 [G] B:109 [GLN] A:1104 [G] ❌ 6S0X_b:109 no longer at interface
b:144 [LEU] a:1115 [G] B:144 [LEU] A:1104 [G] ❌ 6S0X_b:144 no longer at interface
b:174 [ALA] a:1087 [C] B:174 [LYS] A:1076 [U] ❌ 6S0X_b:174 no longer at interface
b:174 [ALA] a:1086 [U] B:174 [LYS] A:1075 [U] ❌ 6S0X_b:174 no longer at interface
b:175 [GLU] a:1112 [A] B:175 [GLU] A:1101 [A] ❌ 6S0X_b:175 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA 0.96 1.29 0.62 0.91 0.95 0.9 0.94 0.66 0.51 0.14 0.51


Other pairs involving 6S0X_b_a or 7K00_B_A

Total number of entries: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1b_1a 7K00_B_A 0.80 0.98 1.1 0.62 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA compare
4Y4O_1b_1a 6S0X_b_a 0.63 0.95 1.78 0.67 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA compare
7K00_B_A 7O7Y_AZ_A2 0.74 0.9 1.99 0.24 Ribosomal protein S2/SIS domain compare
7K00_B_A 7RYG_b_a 0.73 0.94 1.57 0.78 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA compare
6S0X_b_a 7RYG_b_a 0.60 0.97 1.98 0.63 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA compare
6S0X_b_a 7O7Y_AZ_A2 0.60 0.88 2.46 0.19 Ribosomal protein S2/SIS domain compare
6S0X_b_a 7K00_B_A 0.66 0.96 1.29 0.62 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA compare