Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
| 6S0X_b
|
6S0X_a
|
7RYG_b
|
7RYG_a
|
Conserved?
|
|---|---|---|---|---|
| b:20 [THR] | a:838 [G] | b:22 [THR] | a:827 [C] | ✔ |
| b:178 [LYS] | a:1086 [U] | b:180 [ASN] | a:1072 [U] | ✔ |
| b:25 [PRO] | a:836 [A] | b:27 [PRO] | a:825 [A] | ✔ |
| b:106 [THR] | a:1083 [G] | b:108 [THR] | a:1069 [G] | ✔ |
| b:106 [THR] | a:1084 [U] | b:108 [THR] | a:1070 [U] | ✔ |
| b:106 [THR] | a:1114 [C] | b:108 [THR] | a:1100 [C] | ✔ |
| b:98 [GLY] | a:1112 [A] | b:100 [GLY] | a:1098 [A] | ✔ |
| b:98 [GLY] | a:1113 [A] | b:100 [GLY] | a:1099 [A] | ✔ |
| b:99 [GLY] | a:1112 [A] | b:101 [GLY] | a:1098 [A] | ✔ |
| b:103 [ASN] | a:1084 [U] | b:105 [ASN] | a:1070 [U] | ✔ |
| b:103 [ASN] | a:1085 [G] | b:105 [ASN] | a:1071 [G] | ✔ |
| b:110 [ARG] | a:1114 [C] | b:112 [SER] | a:1100 [C] | ✔ |
| b:139 [LYS] | a:1108 [C] | b:141 [ARG] | a:1094 [C] | ✔ |
| b:139 [LYS] | a:1109 [C] | b:141 [ARG] | a:1095 [C] | ✔ |
| b:171 [ASN] | a:1112 [A] | b:173 [ILE] | a:1098 [A] | ✔ |
| b:105 [LYS] | a:1084 [U] | b:107 [LYS] | a:1070 [U] | ✔ |
| b:21 [ARG] | a:838 [G] | b:23 [ARG] | a:827 [C] | ✔ |
| b:21 [ARG] | a:839 [U] | b:23 [ARG] | a:828 [C] | ✔ |
| b:97 [LEU] | a:1113 [A] | b:99 [LEU] | a:1099 [A] | ✔ |
| b:102 [THR] | a:1085 [G] | b:104 [THR] | a:1071 [G] | ✔ |
| b:102 [THR] | a:1086 [U] | b:104 [THR] | a:1072 [U] | ✔ |
| b:95 [ARG] | a:1111 [C] | b:97 [ARG] | a:1097 [C] | ✔ |
| b:23 [TRP] | a:837 [A] | b:25 [TRP] | a:826 [G] | ✔ |
| b:178 [LYS] | a:1085 [G] | b:180 [ASN] | a:1071 [G] | ❌ 7RYG_b_a |
| b:98 [GLY] | a:1085 [G] | b:100 [GLY] | a:1071 [G] | ❌ 7RYG_b_a |
| b:99 [GLY] | a:1085 [G] | b:101 [GLY] | a:1071 [G] | ❌ 7RYG_b_a |
| b:97 [LEU] | a:1112 [A] | b:99 [LEU] | a:1098 [A] | ❌ 7RYG_b_a |
| b:95 [ARG] | a:1112 [A] | b:97 [ARG] | a:1098 [A] | ❌ 7RYG_b_a |
| b:95 [ARG] | a:1113 [A] | b:97 [ARG] | a:1099 [A] | ❌ 7RYG_b_a |
| b:102 [THR] | a:1112 [A] | b:104 [THR] | a:1098 [A] | ❌ 6S0X_b_a |
| b:103 [ASN] | a:1112 [A] | b:105 [ASN] | a:1098 [A] | ❌ 6S0X_b_a |
| b:23 [TRP] | a:838 [G] | b:25 [TRP] | a:827 [C] | ❌ 6S0X_b_a |
| b:25 [PRO] | a:837 [A] | b:27 [PRO] | a:826 [G] | ❌ 6S0X_b_a |
| b:97 [LEU] | a:1114 [C] | b:99 [LEU] | a:1100 [C] | ❌ 6S0X_b_a |
| b:178 [LYS] | a:1087 [C] | b:180 [ASN] | a:1073 [C] | ❌ 7RYG_a:1073 no longer at interface |
| b:113 [ARG] | a:1115 [G] | b:115 [ARG] | a:1101 [G] | ❌ 7RYG_b:115, 7RYG_a:1101 no longer at interface |
| b:110 [ARG] | a:1115 [G] | b:112 [SER] | a:1101 [G] | ❌ 7RYG_a:1101 no longer at interface |
| b:136 [GLU] | a:1107 [C] | b:138 [GLU] | a:1093 [C] | ❌ 7RYG_b:138, 7RYG_a:1093 no longer at interface |
| b:132 [LYS] | a:1168 [C] | b:134 [ARG] | a:1155 [C] | ❌ 6S0X_b:132, 6S0X_a:1168 no longer at interface |
| b:139 [LYS] | a:1179 [A] | b:141 [ARG] | a:1166 [A] | ❌ 6S0X_a:1179 no longer at interface |
| b:21 [ARG] | a:840 [G] | b:23 [ARG] | a:829 [G] | ❌ 6S0X_a:840 no longer at interface |
| b:95 [ARG] | a:1110 [G] | b:97 [ARG] | a:1096 [G] | ❌ 6S0X_a:1110 no longer at interface |
| b:113 [ARG] | a:1114 [C] | b:115 [ARG] | a:1100 [C] | ❌ 7RYG_b:115 no longer at interface |
| b:107 [ILE] | a:1113 [A] | b:109 [LEU] | a:1099 [A] | ❌ 7RYG_b:109 no longer at interface |
| b:107 [ILE] | a:1114 [C] | b:109 [LEU] | a:1100 [C] | ❌ 7RYG_b:109 no longer at interface |
| b:143 [ARG] | a:1114 [C] | b:145 [LYS] | a:1100 [C] | ❌ 7RYG_b:145 no longer at interface |
| b:136 [GLU] | a:1108 [C] | b:138 [GLU] | a:1094 [C] | ❌ 7RYG_b:138 no longer at interface |
| b:96 [TRP] | a:1112 [A] | b:98 [TRP] | a:1098 [A] | ❌ 7RYG_b:98 no longer at interface |
| b:175 [GLU] | a:1112 [A] | b:177 [GLU] | a:1098 [A] | ❌ 6S0X_b:175 no longer at interface |
| b:28 [LYS] | a:836 [A] | b:30 [ARG] | a:825 [A] | ❌ 6S0X_b:28 no longer at interface |
| b:28 [LYS] | a:837 [A] | b:30 [ARG] | a:826 [G] | ❌ 6S0X_b:28 no longer at interface |
Export the table of contacts
Properties of this pair
|
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ribosomal protein S2/SIS domain | Bacterial small subunit ribosomal RNA | 0.97 | 1.98 | 0.63 | 0.9 | 0.96 | 0.84 | 0.82 | 0.60 | 0.46 | 0.12 | 0.61 |
Other pairs involving 6S0X_b_a or 7RYG_b_a
Total number of entries: 6
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_1b_1a | 7RYG_b_a | 0.63 | 0.92 | 1.92 | 0.58 | Ribosomal protein S2/SIS domain | Bacterial small subunit ribosomal RNA | compare |
| 4Y4O_1b_1a | 6S0X_b_a | 0.63 | 0.95 | 1.78 | 0.67 | Ribosomal protein S2/SIS domain | Bacterial small subunit ribosomal RNA | compare |
| 6S0X_b_a | 7RYG_b_a | 0.60 | 0.97 | 1.98 | 0.63 | Ribosomal protein S2/SIS domain | Bacterial small subunit ribosomal RNA | compare |
| 6S0X_b_a | 7O7Y_AZ_A2 | 0.60 | 0.88 | 2.46 | 0.19 | Ribosomal protein S2/SIS domain | compare | |
| 6S0X_b_a | 7K00_B_A | 0.66 | 0.96 | 1.29 | 0.62 | Ribosomal protein S2/SIS domain | Bacterial small subunit ribosomal RNA | compare |
| 7K00_B_A | 7RYG_b_a | 0.73 | 0.94 | 1.57 | 0.78 | Ribosomal protein S2/SIS domain | Bacterial small subunit ribosomal RNA | compare |