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All interfaces > All interologs > Interface groups > group84 > 7K00_B_A

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Licorice
Surface

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7K00_B
7K00_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
B:20 [THR] A:830 [G] 4.26 A:856 [C] 57.17
B:21 [ARG] A:830 [G] 3.34 A:856 [C] sugar:BB 60.84
B:21 [ARG] A:831 [A] 3.3 A:855 [U] 60.84
B:21 [ARG] A:832 [G] 4.28 A:854 [U] 60.84
B:23 [TRP] A:829 [G] 3.05 A:857 [C] 44.79
B:23 [TRP] A:830 [G] 3.43 A:856 [C] 44.79
B:25 [PRO] A:828 [U] 3.38 A:858 [G] 89.6
B:25 [PRO] A:829 [G] 3.27 A:857 [C] 89.6
B:26 [LYS] A:859 [G] 4.98 72.89
B:37 [LYS] A:847 [G] 4.89 A:839 [C] 56.47
B:37 [LYS] A:848 [C] 3.61 A:838 [G] 56.47
B:95 [ARG] A:1100 [C] 3.44 base/AA stacks 83.89
B:95 [ARG] A:1101 [A] 2.57 83.89
B:95 [ARG] A:1102 [A] 2.77 A:1073 [U] 83.89
B:95 [ARG] A:1103 [C] 3.83 A:1072 [G] 83.89
B:96 [TRP] A:1101 [A] 4.85 90.38
B:97 [LEU] A:1102 [A] 4.16 A:1073 [U] 61.45
B:97 [LEU] A:1103 [C] 3.81 A:1072 [G] 61.45
B:98 [GLY] A:1074 [G] 4.97 A:1083 [U] 86.51
B:98 [GLY] A:1101 [A] 3.13 86.51
B:98 [GLY] A:1102 [A] 3.01 A:1073 [U] sugar:BB 86.51
B:98 [GLY] A:1103 [C] 4.09 A:1072 [G] 86.51
B:99 [GLY] A:1074 [G] 3.61 A:1083 [U] 98.87
B:99 [GLY] A:1101 [A] 3.08 98.87
B:102 [THR] A:1074 [G] 3.01 A:1083 [U] sugar:SC 98.95
B:102 [THR] A:1075 [U] 3.42 A:1082 [A] 98.95
B:102 [THR] A:1101 [A] 3.17 base:SC 98.95
B:103 [ASN] A:1072 [G] 4.66 A:1103 [C] 99.0
B:103 [ASN] A:1073 [U] 2.13 A:1102 [A] base:SC, sugar:SC 99.0
B:103 [ASN] A:1074 [G] 3.19 A:1083 [U] 99.0
B:103 [ASN] A:1102 [A] 4.18 A:1073 [U] 99.0
B:103 [ASN] A:1103 [C] 3.69 A:1072 [G] 99.0
B:105 [LYS] A:1073 [U] 3.05 A:1102 [A] 46.5
B:105 [LYS] A:1074 [G] 3.41 A:1083 [U] 46.5
B:106 [THR] A:1072 [G] 3.34 A:1103 [C] 75.05
B:106 [THR] A:1073 [U] 3.62 A:1102 [A] 75.05
B:106 [THR] A:1103 [C] 3.37 A:1072 [G] 75.05
B:106 [THR] A:1104 [G] 4.36 A:1071 [C] 75.05
B:107 [VAL] A:1103 [C] 4.03 A:1072 [G] 77.42
B:109 [GLN] A:1104 [G] 3.69 A:1071 [C] sugar:SC 29.65
B:110 [SER] A:1104 [G] 3.6 A:1071 [C] 77.05
B:131 [LYS] A:1160 [G] 4.98 A:1176 [A] 87.06
B:132 [LYS] A:1158 [C] 3.54 A:1181 [G] 77.69
B:132 [LYS] A:1159 [U] 3.79 77.69
B:132 [LYS] A:1160 [G] 3.62 A:1176 [A] 77.69
B:139 [ARG] A:1097 [C] 3.28 A:1088 [G] 69.92
B:139 [ARG] A:1098 [C] 3.99 A:1087 [G] 69.92
B:139 [ARG] A:1169 [A] 3.5 sugar:SC 69.92
B:139 [ARG] A:1170 [A] 4.82 A:1166 [G] 69.92
B:143 [LYS] A:1104 [G] 5.0 A:1071 [C] 72.83
B:144 [LEU] A:1104 [G] 4.15 A:1071 [C] 80.95
B:171 [ILE] A:1101 [A] 3.68 49.67
B:174 [LYS] A:1075 [U] 3.1 A:1082 [A] 43.86
B:174 [LYS] A:1076 [U] 1.87 A:1081 [A] 43.86
B:175 [GLU] A:1101 [A] 3.45 base/AA stacks 98.9
B:178 [ASN] A:1075 [U] 3.15 A:1082 [A] 53.11

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group84 7K00_B_A B: 30s ribosomal protein s2, Escherichia coli (natural) A: 16s rRNA, Escherichia coli (natural) P0A7V0 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1b_1a 7K00_B_A 0.80 0.98 1.1 0.62 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA compare
7K00_B_A 7O7Y_AZ_A2 0.74 0.9 1.99 0.24 Ribosomal protein S2/SIS domain compare
7K00_B_A 7RYG_b_a 0.73 0.94 1.57 0.78 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA compare
6S0X_b_a 7K00_B_A 0.66 0.96 1.29 0.62 Ribosomal protein S2/SIS domain Bacterial small subunit ribosomal RNA compare