RNAprotDB

All interfaces > All interologs > Interface groups > group84 > 7O7Y_AZ_A2

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7O7Y_AZ
7O7Y_A2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
AZ:30 [LEU] A2:1099 [C] 4.47 A2:1135 [G] 50.58
AZ:31 [ASP] A2:1099 [C] 4.96 A2:1135 [G] 64.02
AZ:32 [PHE] A2:1097 [G] 4.2 A2:1137 [U] 33.42
AZ:32 [PHE] A2:1098 [G] 3.48 A2:1136 [C] 33.42
AZ:32 [PHE] A2:1099 [C] 3.83 A2:1135 [G] 33.42
AZ:41 [ARG] A2:1126 [C] 4.13 A2:1108 [G] 67.74
AZ:41 [ARG] A2:1127 [G] 2.84 A2:1107 [C] 67.74
AZ:43 [SER] A2:1110 [C] 3.9 26.07
AZ:102 [ARG] A2:1378 [U] 3.45 86.21
AZ:102 [ARG] A2:1379 [A] 3.27 86.21
AZ:102 [ARG] A2:1380 [A] 4.89 A2:1351 [U] 86.21
AZ:102 [ARG] A2:1381 [C] 4.83 A2:1350 [G] 86.21
AZ:103 [PHE] A2:1379 [A] 4.94 58.71
AZ:104 [THR] A2:1380 [A] 4.49 A2:1351 [U] 52.46
AZ:104 [THR] A2:1381 [C] 3.82 A2:1350 [G] 52.46
AZ:105 [PRO] A2:1379 [A] 3.33 83.35
AZ:105 [PRO] A2:1380 [A] 3.09 A2:1351 [U] sugar:BB 83.35
AZ:105 [PRO] A2:1381 [C] 4.63 A2:1350 [G] 83.35
AZ:106 [GLY] A2:1352 [G] 4.35 A2:1361 [U] 91.93
AZ:106 [GLY] A2:1379 [A] 3.58 91.93
AZ:109 [THR] A2:1352 [G] 2.91 A2:1361 [U] sugar:SC 98.27
AZ:109 [THR] A2:1353 [G] 4.33 A2:1360 [U] 98.27
AZ:109 [THR] A2:1379 [A] 3.32 base:SC 98.27
AZ:110 [ASN] A2:1351 [U] 2.25 A2:1380 [A] base:SC, sugar:SC 96.99
AZ:110 [ASN] A2:1352 [G] 3.29 A2:1361 [U] 96.99
AZ:110 [ASN] A2:1380 [A] 3.79 A2:1351 [U] 96.99
AZ:110 [ASN] A2:1381 [C] 4.2 A2:1350 [G] 96.99
AZ:111 [GLN] A2:1351 [U] 3.11 A2:1380 [A] 54.33
AZ:111 [GLN] A2:1352 [G] 3.44 A2:1361 [U] 54.33
AZ:112 [ILE] A2:1350 [G] 3.7 A2:1381 [C] 30.59
AZ:112 [ILE] A2:1351 [U] 3.26 A2:1380 [A] 30.59
AZ:112 [ILE] A2:1381 [C] 4.64 A2:1350 [G] 30.59
AZ:113 [GLN] A2:1380 [A] 4.97 A2:1351 [U] 53.05
AZ:113 [GLN] A2:1381 [C] 3.73 A2:1350 [G] 53.05
AZ:131 [HIS] A2:1379 [A] 4.51 46.36
AZ:132 [GLN] A2:1379 [A] 2.96 base:SC 82.25
AZ:136 [GLU] A2:1379 [A] 3.8 95.98
AZ:139 [TYR] A2:1353 [G] 3.17 A2:1360 [U] 4.03
AZ:139 [TYR] A2:1354 [A] 2.55 A2:1359 [U] 4.03
AZ:155 [ARG] A2:1138 [U] 3.06 A2:1149 [A] sugar:SC 30.28
AZ:155 [ARG] A2:1139 [C] 2.89 30.28
AZ:155 [ARG] A2:1140 [C] 4.15 30.28
AZ:156 [TYR] A2:1139 [C] 4.5 0.59

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group84 7O7Y_AZ_A2 AZ: 40s ribosomal protein sa, Oryctolagus cuniculus (natural) A2: 18s rRNA, Oryctolagus cuniculus (natural) G1TLT8 Ribosomal protein S2/SIS domain Eukaryotic small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1b_1a 7O7Y_AZ_A2 0.70 0.91 1.35 0.24 Ribosomal protein S2/SIS domain compare
7K00_B_A 7O7Y_AZ_A2 0.74 0.9 1.99 0.24 Ribosomal protein S2/SIS domain compare
6S0X_b_a 7O7Y_AZ_A2 0.60 0.88 2.46 0.19 Ribosomal protein S2/SIS domain compare