Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7RYG_b
|
7RYG_a
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| b:22 [THR] | a:827 [C] | 4.92 | a:853 [G] | 64.39 | ||
| b:23 [ARG] | a:827 [C] | 3.36 | a:853 [G] | 65.1 | ||
| b:23 [ARG] | a:828 [C] | 3.33 | a:852 [G] | 65.1 | ||
| b:23 [ARG] | a:829 [G] | 4.31 | a:851 [U] | 65.1 | ||
| b:25 [TRP] | a:826 [G] | 3.04 | a:854 [C] | 59.27 | ||
| b:25 [TRP] | a:827 [C] | 3.12 | a:853 [G] | 59.27 | ||
| b:27 [PRO] | a:825 [A] | 3.82 | a:855 [G] | 92.95 | ||
| b:27 [PRO] | a:826 [G] | 3.28 | a:854 [C] | 92.95 | ||
| b:30 [ARG] | a:825 [A] | 4.03 | a:855 [G] | 42.45 | ||
| b:30 [ARG] | a:826 [G] | 3.26 | a:854 [C] | 42.45 | ||
| b:97 [ARG] | a:1096 [G] | 3.45 | a:1083 [U] | 85.99 | ||
| b:97 [ARG] | a:1097 [C] | 2.25 | 85.99 | |||
| b:99 [LEU] | a:1099 [A] | 4.19 | a:1070 [U] | 66.15 | ||
| b:99 [LEU] | a:1100 [C] | 4.69 | a:1081 [G] | 66.15 | ||
| b:100 [GLY] | a:1098 [A] | 3.62 | 90.3 | |||
| b:100 [GLY] | a:1099 [A] | 4.12 | a:1070 [U] | 90.3 | ||
| b:101 [GLY] | a:1098 [A] | 4.4 | 98.92 | |||
| b:104 [THR] | a:1071 [G] | 2.94 | a:1080 [U] | 98.87 | ||
| b:104 [THR] | a:1072 [U] | 3.45 | a:1079 [A] | 98.87 | ||
| b:104 [THR] | a:1098 [A] | 3.99 | 98.87 | |||
| b:105 [ASN] | a:1070 [U] | 4.49 | a:1099 [A] | 99.0 | ||
| b:105 [ASN] | a:1071 [G] | 3.56 | a:1080 [U] | 99.0 | ||
| b:105 [ASN] | a:1098 [A] | 4.13 | 99.0 | |||
| b:107 [LYS] | a:1070 [U] | 4.6 | a:1099 [A] | 36.08 | ||
| b:108 [THR] | a:1069 [G] | 4.64 | 72.17 | |||
| b:108 [THR] | a:1070 [U] | 3.68 | a:1099 [A] | 72.17 | ||
| b:108 [THR] | a:1100 [C] | 3.44 | a:1081 [G] | 72.17 | ||
| b:112 [SER] | a:1100 [C] | 4.82 | a:1081 [G] | 80.05 | ||
| b:134 [ARG] | a:1155 [C] | 4.11 | 76.64 | |||
| b:141 [ARG] | a:1094 [C] | 2.37 | a:1085 [G] | 73.64 | ||
| b:141 [ARG] | a:1095 [C] | 2.69 | a:1084 [G] | 73.64 | ||
| b:141 [ARG] | a:1166 [A] | 3.91 | sugar:SC | 73.64 | ||
| b:173 [ILE] | a:1098 [A] | 4.25 | 45.52 | |||
| b:177 [GLU] | a:1098 [A] | 3.59 | 98.77 | |||
| b:180 [ASN] | a:1072 [U] | 3.25 | a:1079 [A] | 50.7 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group84 | 7RYG_b_a | b: 30s ribosomal protein s2, Acinetobacter baumannii ab0057 (natural) a: 16s ribosomal RNA, Acinetobacter baumannii ab0057 (natural) | V5VBC2 | Ribosomal protein S2/SIS domain | Bacterial small subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 3
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_1b_1a | 7RYG_b_a | 0.63 | 0.92 | 1.92 | 0.58 | Ribosomal protein S2/SIS domain | Bacterial small subunit ribosomal RNA | compare |
| 7K00_B_A | 7RYG_b_a | 0.73 | 0.94 | 1.57 | 0.78 | Ribosomal protein S2/SIS domain | Bacterial small subunit ribosomal RNA | compare |
| 6S0X_b_a | 7RYG_b_a | 0.60 | 0.97 | 1.98 | 0.63 | Ribosomal protein S2/SIS domain | Bacterial small subunit ribosomal RNA | compare |