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All interfaces > All interologs > Interface groups > group85 > 4Y4O_1f_1a

Interface analysis

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_1f
4Y4O_1a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1f:2 [ARG] 1a:737 [A] 4.93 1a:669 [U] 69.79
1f:2 [ARG] 1a:738 [C] 2.66 1a:668 [G] 69.79
1f:2 [ARG] 1a:739 [C] 3.11 1a:667 [G] 69.79
1f:4 [TYR] 1a:737 [A] 3.68 1a:669 [U] 98.88
1f:4 [TYR] 1a:738 [C] 3.03 1a:668 [G] 98.88
1f:50 [TYR] 1a:673 [G] 4.21 1a:717 [C] 98.35
1f:50 [TYR] 1a:674 [G] 3.74 1a:716 [A] 98.35
1f:51 [PRO] 1a:674 [G] 4.53 1a:716 [A] 69.14
1f:54 [LYS] 1a:710 [G] 3.62 1a:680 [C] 79.63
1f:54 [LYS] 1a:711 [G] 2.83 1a:679 [C] 79.63
1f:69 [GLU] 1a:737 [A] 4.78 1a:669 [U] 34.39
1f:69 [GLU] 1a:738 [C] 3.51 1a:668 [G] 34.39
1f:69 [GLU] 1a:739 [C] 4.21 1a:667 [G] 34.39
1f:70 [ASP] 1a:738 [C] 4.88 1a:668 [G] 43.51
1f:72 [VAL] 1a:737 [A] 3.01 1a:669 [U] 71.05
1f:72 [VAL] 1a:738 [C] 3.93 1a:668 [G] 71.05
1f:73 [ASN] 1a:670 [G] 3.23 1a:736 [C] base:SC 0.0
1f:73 [ASN] 1a:736 [C] 4.84 1a:670 [G] 0.0
1f:73 [ASN] 1a:737 [A] 2.92 1a:669 [U] base:SC 0.0
1f:73 [ASN] 1a:738 [C] 3.83 1a:668 [G] 0.0
1f:77 [ARG] 1a:670 [G] 2.74 1a:736 [C] sugar:SC 78.21
1f:77 [ARG] 1a:671 [G] 3.24 1a:735 [C] 78.21
1f:80 [ARG] 1a:671 [G] 3.44 1a:735 [C] 73.64
1f:80 [ARG] 1a:672 [U] 3.83 1a:734 [G] 73.64
1f:87 [ARG] 1a:673 [G] 2.67 1a:717 [C] 98.98
1f:87 [ARG] 1a:674 [G] 3.41 1a:716 [A] 98.98
1f:89 [MET] 1a:735 [C] 4.72 1a:671 [G] 73.29
1f:89 [MET] 1a:736 [C] 4.66 1a:670 [G] 73.29
1f:90 [VAL] 1a:736 [C] 2.51 1a:670 [G] sugar:BB 75.4
1f:90 [VAL] 1a:737 [A] 3.2 1a:669 [U] 75.4
1f:91 [VAL] 1a:736 [C] 3.8 1a:670 [G] 80.96
1f:91 [VAL] 1a:737 [A] 3.63 1a:669 [U] 80.96
1f:92 [LYS] 1a:736 [C] 4.3 1a:670 [G] 41.42
1f:92 [LYS] 1a:737 [A] 2.68 1a:669 [U] 41.42
1f:92 [LYS] 1a:738 [C] 3.54 1a:668 [G] 41.42

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group85 4Y4O_1f_1a 1f: 30s ribosomal protein s6, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1a: 16s ribosomal RNA, Thermus thermophilus hb8 (natural) Q5SLP8 Ribosomal protein S6 Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1f_1a 7RYG_f_a 0.80 0.91 3.39 0.5 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare
4Y4O_1f_1a 6S0X_f_a 0.36 0.95 1.68 0.43 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare
4Y4O_1f_1a 4YBB_AF_AA 0.70 0.96 3.45 0.5 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare
4Y4O_1f_1a 7K00_F_A 0.79 0.98 1.91 0.56 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare