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All interfaces > All interologs > Interface groups > group85 > 4Y4O_1f_1a vs 4YBB_AF_AA

Interface analysis


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Common contacts -

4Y4O_1f
4Y4O_1a
4YBB_AF
4YBB_AA
Conserved?
1f:89 [MET] 1a:735 [C] AF:88 [MET] AA:735 [C] ✔
1f:89 [MET] 1a:736 [C] AF:88 [MET] AA:736 [C] ✔
1f:54 [LYS] 1a:710 [G] AF:53 [LYS] AA:710 [G] ✔
1f:54 [LYS] 1a:711 [G] AF:53 [LYS] AA:711 [G] ✔
1f:92 [LYS] 1a:736 [C] AF:91 [ARG] AA:736 [C] ✔
1f:92 [LYS] 1a:737 [A] AF:91 [ARG] AA:737 [C] ✔
1f:92 [LYS] 1a:738 [C] AF:91 [ARG] AA:738 [C] ✔
1f:90 [VAL] 1a:736 [C] AF:89 [VAL] AA:736 [C] ✔
1f:90 [VAL] 1a:737 [A] AF:89 [VAL] AA:737 [C] ✔
1f:51 [PRO] 1a:674 [G] AF:50 [PRO] AA:674 [G] ✔
1f:2 [ARG] 1a:737 [A] AF:2 [ARG] AA:737 [C] ✔
1f:2 [ARG] 1a:738 [C] AF:2 [ARG] AA:738 [C] ✔
1f:2 [ARG] 1a:739 [C] AF:2 [ARG] AA:739 [C] ✔
1f:73 [ASN] 1a:737 [A] AF:71 [ILE] AA:737 [C] ✔
1f:50 [TYR] 1a:673 [G] AF:49 [TYR] AA:673 [A] ✔
1f:50 [TYR] 1a:674 [G] AF:49 [TYR] AA:674 [G] ✔
1f:91 [VAL] 1a:736 [C] AF:90 [MET] AA:736 [C] ✔
1f:91 [VAL] 1a:737 [A] AF:90 [MET] AA:737 [C] ✔
1f:4 [TYR] 1a:737 [A] AF:4 [TYR] AA:737 [C] ✔
1f:4 [TYR] 1a:738 [C] AF:4 [TYR] AA:738 [C] ✔
1f:87 [ARG] 1a:673 [G] AF:86 [ARG] AA:673 [A] ✔
1f:87 [ARG] 1a:674 [G] AF:86 [ARG] AA:674 [G] ✔
1f:70 [ASP] 1a:738 [C] AF:68 [GLN] AA:738 [C] ✔
1f:77 [ARG] 1a:671 [G] AF:75 [GLU] AA:671 [G] ❌ 4YBB_AF_AA
1f:73 [ASN] 1a:736 [C] AF:71 [ILE] AA:736 [C] ❌ 4YBB_AF_AA
1f:73 [ASN] 1a:738 [C] AF:71 [ILE] AA:738 [C] ❌ 4YBB_AF_AA
1f:70 [ASP] 1a:739 [C] AF:68 [GLN] AA:739 [C] ❌ 4Y4O_1f_1a
1f:77 [ARG] 1a:737 [A] AF:75 [GLU] AA:737 [C] ❌ 4Y4O_1f_1a
1f:77 [ARG] 1a:736 [C] AF:75 [GLU] AA:736 [C] ❌ 4Y4O_1f_1a
1f:87 [ARG] 1a:672 [U] AF:86 [ARG] AA:672 [U] ❌ 4Y4O_1f_1a
1f:77 [ARG] 1a:670 [G] AF:75 [GLU] AA:670 [G] ❌ 4YBB_AA:670 no longer at interface
1f:73 [ASN] 1a:670 [G] AF:71 [ILE] AA:670 [G] ❌ 4YBB_AA:670 no longer at interface
1f:50 [TYR] 1a:675 [A] AF:49 [TYR] AA:675 [A] ❌ 4Y4O_1a:675 no longer at interface
1f:94 [GLN] 1a:662 [G] AF:93 [LYS] AA:662 [U] ❌ 4Y4O_1f:94, 4Y4O_1a:662 no longer at interface
1f:80 [ARG] 1a:671 [G] AF:78 [PHE] AA:671 [G] ❌ 4YBB_AF:78 no longer at interface
1f:80 [ARG] 1a:672 [U] AF:78 [PHE] AA:672 [U] ❌ 4YBB_AF:78 no longer at interface
1f:72 [VAL] 1a:737 [A] AF:70 [VAL] AA:737 [C] ❌ 4YBB_AF:70 no longer at interface
1f:72 [VAL] 1a:738 [C] AF:70 [VAL] AA:738 [C] ❌ 4YBB_AF:70 no longer at interface
1f:52 [ILE] 1a:674 [G] AF:51 [ILE] AA:674 [G] ❌ 4Y4O_1f:52 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein S6 Bacterial small subunit ribosomal RNA 0.96 3.45 0.50 0.74 0.96 0.81 0.92 0.70 0.63 0.40 0.56


Other pairs involving 4Y4O_1f_1a or 4YBB_AF_AA

Total number of entries: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1f_1a 4YBB_AF_AA 0.70 0.96 3.45 0.5 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare
4Y4O_1f_1a 6S0X_f_a 0.36 0.95 1.68 0.43 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare
4YBB_AF_AA 6S0X_f_a 0.21 0.96 3.66 0.07 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare
4Y4O_1f_1a 7K00_F_A 0.79 0.98 1.91 0.56 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare
4YBB_AF_AA 7K00_F_A 0.91 0.98 2.9 0.88 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare
4Y4O_1f_1a 7RYG_f_a 0.80 0.91 3.39 0.5 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare
4YBB_AF_AA 7RYG_f_a 0.85 0.97 2.25 0.67 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare