Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
| 4Y4O_1f
|
4Y4O_1a
|
6S0X_f
|
6S0X_a
|
Conserved?
|
|---|---|---|---|---|
| 1f:89 [MET] | 1a:736 [C] | f:90 [MET] | a:744 [U] | ✔ |
| 1f:77 [ARG] | 1a:670 [G] | f:77 [GLN] | a:678 [A] | ✔ |
| 1f:77 [ARG] | 1a:671 [G] | f:77 [GLN] | a:679 [G] | ✔ |
| 1f:92 [LYS] | 1a:737 [A] | f:93 [ARG] | a:745 [U] | ✔ |
| 1f:92 [LYS] | 1a:738 [C] | f:93 [ARG] | a:746 [U] | ✔ |
| 1f:90 [VAL] | 1a:736 [C] | f:91 [VAL] | a:744 [U] | ✔ |
| 1f:90 [VAL] | 1a:737 [A] | f:91 [VAL] | a:745 [U] | ✔ |
| 1f:2 [ARG] | 1a:738 [C] | f:2 [ARG] | a:746 [U] | ✔ |
| 1f:2 [ARG] | 1a:739 [C] | f:2 [ARG] | a:747 [C] | ✔ |
| 1f:50 [TYR] | 1a:673 [G] | f:50 [TYR] | a:681 [G] | ✔ |
| 1f:91 [VAL] | 1a:736 [C] | f:92 [ILE] | a:744 [U] | ✔ |
| 1f:91 [VAL] | 1a:737 [A] | f:92 [ILE] | a:745 [U] | ✔ |
| 1f:4 [TYR] | 1a:738 [C] | f:4 [TYR] | a:746 [U] | ✔ |
| 1f:87 [ARG] | 1a:673 [G] | f:88 [ARG] | a:681 [G] | ✔ |
| 1f:92 [LYS] | 1a:736 [C] | f:93 [ARG] | a:744 [U] | ❌ 6S0X_f_a |
| 1f:2 [ARG] | 1a:737 [A] | f:2 [ARG] | a:745 [U] | ❌ 6S0X_f_a |
| 1f:4 [TYR] | 1a:737 [A] | f:4 [TYR] | a:745 [U] | ❌ 6S0X_f_a |
| 1f:50 [TYR] | 1a:672 [U] | f:50 [TYR] | a:680 [U] | ❌ 4Y4O_1f_1a |
| 1f:51 [PRO] | 1a:710 [G] | f:51 [GLU] | a:718 [G] | ❌ 4Y4O_1f_1a |
| 1f:87 [ARG] | 1a:671 [G] | f:88 [ARG] | a:679 [G] | ❌ 4Y4O_1f_1a |
| 1f:87 [ARG] | 1a:672 [U] | f:88 [ARG] | a:680 [U] | ❌ 4Y4O_1f_1a |
| 1f:89 [MET] | 1a:737 [A] | f:90 [MET] | a:745 [U] | ❌ 4Y4O_1f_1a |
| 1f:92 [LYS] | 1a:739 [C] | f:93 [ARG] | a:747 [C] | ❌ 4Y4O_1f_1a |
| 1f:89 [MET] | 1a:735 [C] | f:90 [MET] | a:743 [C] | ❌ 6S0X_a:743 no longer at interface |
| 1f:54 [LYS] | 1a:711 [G] | f:54 [ASP] | a:719 [G] | ❌ 6S0X_f:54, 6S0X_a:719 no longer at interface |
| 1f:51 [PRO] | 1a:674 [G] | f:51 [GLU] | a:682 [G] | ❌ 6S0X_a:682 no longer at interface |
| 1f:50 [TYR] | 1a:674 [G] | f:50 [TYR] | a:682 [G] | ❌ 6S0X_a:682 no longer at interface |
| 1f:87 [ARG] | 1a:674 [G] | f:88 [ARG] | a:682 [G] | ❌ 6S0X_a:682 no longer at interface |
| 1f:2 [ARG] | 1a:740 [U] | f:2 [ARG] | a:748 [U] | ❌ 4Y4O_1a:740 no longer at interface |
| 1f:80 [ARG] | 1a:671 [G] | f:80 [ALA] | a:679 [G] | ❌ 6S0X_f:80 no longer at interface |
| 1f:80 [ARG] | 1a:672 [U] | f:80 [ALA] | a:680 [U] | ❌ 6S0X_f:80 no longer at interface |
| 1f:72 [VAL] | 1a:737 [A] | f:72 [ALA] | a:745 [U] | ❌ 6S0X_f:72 no longer at interface |
| 1f:72 [VAL] | 1a:738 [C] | f:72 [ALA] | a:746 [U] | ❌ 6S0X_f:72 no longer at interface |
| 1f:54 [LYS] | 1a:710 [G] | f:54 [ASP] | a:718 [G] | ❌ 6S0X_f:54 no longer at interface |
| 1f:69 [GLU] | 1a:737 [A] | f:69 [ASN] | a:745 [U] | ❌ 6S0X_f:69 no longer at interface |
| 1f:69 [GLU] | 1a:738 [C] | f:69 [ASN] | a:746 [U] | ❌ 6S0X_f:69 no longer at interface |
| 1f:69 [GLU] | 1a:739 [C] | f:69 [ASN] | a:747 [C] | ❌ 6S0X_f:69 no longer at interface |
| 1f:73 [ASN] | 1a:670 [G] | f:73 [THR] | a:678 [A] | ❌ 6S0X_f:73 no longer at interface |
| 1f:73 [ASN] | 1a:736 [C] | f:73 [THR] | a:744 [U] | ❌ 6S0X_f:73 no longer at interface |
| 1f:73 [ASN] | 1a:737 [A] | f:73 [THR] | a:745 [U] | ❌ 6S0X_f:73 no longer at interface |
| 1f:73 [ASN] | 1a:738 [C] | f:73 [THR] | a:746 [U] | ❌ 6S0X_f:73 no longer at interface |
| 1f:70 [ASP] | 1a:738 [C] | f:70 [ASN] | a:746 [U] | ❌ 6S0X_f:70 no longer at interface |
| 1f:52 [ILE] | 1a:673 [G] | f:52 [ILE] | a:681 [G] | ❌ 4Y4O_1f:52 no longer at interface |
| 1f:81 [ILE] | 1a:672 [U] | f:81 [LYS] | a:680 [U] | ❌ 4Y4O_1f:81 no longer at interface |
| 1f:86 [ARG] | 1a:673 [G] | f:87 [ILE] | a:681 [G] | ❌ 4Y4O_1f:86 no longer at interface |
| 1f:86 [ARG] | 1a:672 [U] | f:87 [ILE] | a:680 [U] | ❌ 4Y4O_1f:86 no longer at interface |
| 1f:88 [VAL] | 1a:671 [G] | f:89 [TYR] | a:679 [G] | ❌ 4Y4O_1f:88 no longer at interface |
Export the table of contacts
Properties of this pair
|
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | 0.95 | 1.68 | 0.43 | 0.75 | 0.95 | 0.71 | 0.9 | 0.36 | 0.13 | 0.07 | 0.73 |
Other pairs involving 4Y4O_1f_1a or 6S0X_f_a
Total number of entries: 7
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_1f_1a | 7K00_F_A | 0.79 | 0.98 | 1.91 | 0.56 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 4Y4O_1f_1a | 7RYG_f_a | 0.80 | 0.91 | 3.39 | 0.5 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 4Y4O_1f_1a | 4YBB_AF_AA | 0.70 | 0.96 | 3.45 | 0.5 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 4Y4O_1f_1a | 6S0X_f_a | 0.36 | 0.95 | 1.68 | 0.43 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 6S0X_f_a | 7RYG_f_a | 0.22 | 0.96 | 3.21 | 0.08 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 6S0X_f_a | 7K00_F_A | 0.39 | 0.95 | 2.53 | 0.4 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 4YBB_AF_AA | 6S0X_f_a | 0.21 | 0.96 | 3.66 | 0.07 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |