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All interfaces > All interologs > Interface groups > group85 > 4YBB_AF_AA

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Licorice
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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4YBB_AF
4YBB_AA
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
AF:2 [ARG] AA:737 [C] 4.61 AA:669 [G] 69.35
AF:2 [ARG] AA:738 [C] 2.27 AA:668 [G] 69.35
AF:2 [ARG] AA:739 [C] 2.6 AA:667 [G] 69.35
AF:4 [TYR] AA:737 [C] 3.86 AA:669 [G] 98.9
AF:4 [TYR] AA:738 [C] 2.66 AA:668 [G] 98.9
AF:49 [TYR] AA:673 [A] 4.56 AA:717 [U] 98.77
AF:49 [TYR] AA:674 [G] 3.47 AA:716 [A] 98.77
AF:49 [TYR] AA:675 [A] 4.99 AA:715 [A] 98.77
AF:50 [PRO] AA:674 [G] 4.84 AA:716 [A] 48.23
AF:51 [ILE] AA:674 [G] 3.85 AA:716 [A] 98.67
AF:53 [LYS] AA:710 [G] 3.08 AA:680 [C] 72.75
AF:53 [LYS] AA:711 [G] 3.06 AA:679 [C] 72.75
AF:68 [GLN] AA:738 [C] 4.06 AA:668 [G] 32.69
AF:68 [GLN] AA:739 [C] 3.5 AA:667 [G] 32.69
AF:71 [ILE] AA:737 [C] 4.99 AA:669 [G] 59.03
AF:75 [GLU] AA:736 [C] 4.61 AA:670 [G] 73.52
AF:75 [GLU] AA:737 [C] 2.94 AA:669 [G] sugar:SC 73.52
AF:79 [ARG] AA:671 [G] 3.3 AA:735 [C] 75.69
AF:79 [ARG] AA:672 [U] 3.67 AA:734 [G] 75.69
AF:86 [ARG] AA:672 [U] 4.93 AA:734 [G] 98.5
AF:86 [ARG] AA:673 [A] 3.45 AA:717 [U] 98.5
AF:86 [ARG] AA:674 [G] 2.71 AA:716 [A] 98.5
AF:88 [MET] AA:735 [C] 3.01 AA:671 [G] 70.27
AF:88 [MET] AA:736 [C] 3.32 AA:670 [G] 70.27
AF:89 [VAL] AA:736 [C] 2.5 AA:670 [G] sugar:BB 67.33
AF:89 [VAL] AA:737 [C] 3.51 AA:669 [G] 67.33
AF:90 [MET] AA:736 [C] 3.58 AA:670 [G] 73.74
AF:90 [MET] AA:737 [C] 3.46 AA:669 [G] 73.74
AF:91 [ARG] AA:736 [C] 4.35 AA:670 [G] 65.29
AF:91 [ARG] AA:737 [C] 2.71 AA:669 [G] 65.29
AF:91 [ARG] AA:738 [C] 3.57 AA:668 [G] 65.29
AF:93 [LYS] AA:662 [U] 4.93 AA:743 [A] 58.9

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group85 4YBB_AF_AA AF: 30s ribosomal protein s6, Escherichia coli (strain k12) (natural) AA: 16s rRNA, Escherichia coli k-12 (natural) P02358 Ribosomal protein S6 Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1f_1a 4YBB_AF_AA 0.70 0.96 3.45 0.5 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare
4YBB_AF_AA 7K00_F_A 0.91 0.98 2.9 0.88 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare
4YBB_AF_AA 7RYG_f_a 0.85 0.97 2.25 0.67 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare
4YBB_AF_AA 6S0X_f_a 0.21 0.96 3.66 0.07 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare