RNAprotDB

All interfaces > All interologs > Interface groups > group85 > 4YBB_AF_AA vs 7K00_F_A

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

4YBB_AF
4YBB_AA
7K00_F
7K00_A
Conserved?
AF:93 [LYS] AA:662 [U] F:93 [LYS] A:662 [U] ✔
AF:68 [GLN] AA:738 [C] F:68 [GLN] A:738 [C] ✔
AF:68 [GLN] AA:739 [C] F:68 [GLN] A:739 [C] ✔
AF:89 [VAL] AA:736 [C] F:89 [VAL] A:736 [C] ✔
AF:89 [VAL] AA:737 [C] F:89 [VAL] A:737 [C] ✔
AF:90 [MET] AA:736 [C] F:90 [MET] A:736 [C] ✔
AF:90 [MET] AA:737 [C] F:90 [MET] A:737 [C] ✔
AF:88 [MET] AA:735 [C] F:88 [MET] A:735 [C] ✔
AF:88 [MET] AA:736 [C] F:88 [MET] A:736 [C] ✔
AF:86 [ARG] AA:673 [A] F:86 [ARG] A:673 [A] ✔
AF:86 [ARG] AA:674 [G] F:86 [ARG] A:674 [G] ✔
AF:75 [GLU] AA:737 [C] F:75 [GLU] A:737 [C] ✔
AF:2 [ARG] AA:738 [C] F:2 [ARG] A:738 [C] ✔
AF:2 [ARG] AA:739 [C] F:2 [ARG] A:739 [C] ✔
AF:49 [TYR] AA:673 [A] F:49 [TYR] A:673 [A] ✔
AF:49 [TYR] AA:674 [G] F:49 [TYR] A:674 [G] ✔
AF:91 [ARG] AA:736 [C] F:91 [ARG] A:736 [C] ✔
AF:91 [ARG] AA:737 [C] F:91 [ARG] A:737 [C] ✔
AF:91 [ARG] AA:738 [C] F:91 [ARG] A:738 [C] ✔
AF:50 [PRO] AA:674 [G] F:50 [PRO] A:674 [G] ✔
AF:51 [ILE] AA:674 [G] F:51 [ILE] A:674 [G] ✔
AF:4 [TYR] AA:737 [C] F:4 [TYR] A:737 [C] ✔
AF:4 [TYR] AA:738 [C] F:4 [TYR] A:738 [C] ✔
AF:79 [ARG] AA:671 [G] F:79 [ARG] A:671 [G] ✔
AF:79 [ARG] AA:672 [U] F:79 [ARG] A:672 [U] ✔
AF:86 [ARG] AA:672 [U] F:86 [ARG] A:672 [U] ❌ 7K00_F_A
AF:75 [GLU] AA:736 [C] F:75 [GLU] A:736 [C] ❌ 7K00_F_A
AF:2 [ARG] AA:737 [C] F:2 [ARG] A:737 [C] ❌ 7K00_F_A
AF:49 [TYR] AA:675 [A] F:49 [TYR] A:675 [A] ❌ 7K00_A:675 no longer at interface
AF:93 [LYS] AA:663 [A] F:93 [LYS] A:663 [A] ❌ 4YBB_AA:663 no longer at interface
AF:71 [ILE] AA:737 [C] F:71 [ILE] A:737 [C] ❌ 7K00_F:71 no longer at interface
AF:54 [LEU] AA:710 [G] F:53 [LYS] A:710 [G] ❌ 4YBB_AF:54 no longer at interface
AF:54 [LEU] AA:711 [G] F:53 [LYS] A:711 [G] ❌ 4YBB_AF:54 no longer at interface
AF:72 [ASP] AA:737 [C] F:72 [ASP] A:737 [C] ❌ 4YBB_AF:72 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein S6 Bacterial small subunit ribosomal RNA 0.98 2.9 0.88 0.98 0.98 0.88 0.92 0.91 0.77 0.50 0.67


Other pairs involving 4YBB_AF_AA or 7K00_F_A

Total number of entries: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1f_1a 7K00_F_A 0.79 0.98 1.91 0.56 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare
4Y4O_1f_1a 4YBB_AF_AA 0.70 0.96 3.45 0.5 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare
7K00_F_A 7RYG_f_a 0.85 0.93 1.75 0.67 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare
6S0X_f_a 7K00_F_A 0.39 0.95 2.53 0.4 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare
4YBB_AF_AA 7K00_F_A 0.91 0.98 2.9 0.88 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare
4YBB_AF_AA 7RYG_f_a 0.85 0.97 2.25 0.67 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare
4YBB_AF_AA 6S0X_f_a 0.21 0.96 3.66 0.07 Ribosomal protein S6 Bacterial small subunit ribosomal RNA compare