Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
| 6S0X_f
|
6S0X_a
|
7K00_F
|
7K00_A
|
Conserved?
|
|---|---|---|---|---|
| f:81 [LYS] | a:680 [U] | F:79 [ARG] | A:672 [U] | ✔ |
| f:92 [ILE] | a:744 [U] | F:90 [MET] | A:736 [C] | ✔ |
| f:92 [ILE] | a:745 [U] | F:90 [MET] | A:737 [C] | ✔ |
| f:93 [ARG] | a:745 [U] | F:91 [ARG] | A:737 [C] | ✔ |
| f:93 [ARG] | a:746 [U] | F:91 [ARG] | A:738 [C] | ✔ |
| f:90 [MET] | a:744 [U] | F:88 [MET] | A:736 [C] | ✔ |
| f:2 [ARG] | a:746 [U] | F:2 [ARG] | A:738 [C] | ✔ |
| f:2 [ARG] | a:747 [C] | F:2 [ARG] | A:739 [C] | ✔ |
| f:91 [VAL] | a:744 [U] | F:89 [VAL] | A:736 [C] | ✔ |
| f:91 [VAL] | a:745 [U] | F:89 [VAL] | A:737 [C] | ✔ |
| f:50 [TYR] | a:681 [G] | F:49 [TYR] | A:673 [A] | ✔ |
| f:88 [ARG] | a:681 [G] | F:86 [ARG] | A:673 [A] | ✔ |
| f:4 [TYR] | a:746 [U] | F:4 [TYR] | A:738 [C] | ✔ |
| f:93 [ARG] | a:747 [C] | F:91 [ARG] | A:739 [C] | ❌ 7K00_F_A |
| f:90 [MET] | a:745 [U] | F:88 [MET] | A:737 [C] | ❌ 7K00_F_A |
| f:51 [GLU] | a:718 [G] | F:50 [PRO] | A:710 [G] | ❌ 7K00_F_A |
| f:50 [TYR] | a:680 [U] | F:49 [TYR] | A:672 [U] | ❌ 7K00_F_A |
| f:77 [GLN] | a:679 [G] | F:75 [GLU] | A:671 [G] | ❌ 7K00_F_A |
| f:88 [ARG] | a:679 [G] | F:86 [ARG] | A:671 [G] | ❌ 7K00_F_A |
| f:88 [ARG] | a:680 [U] | F:86 [ARG] | A:672 [U] | ❌ 7K00_F_A |
| f:52 [ILE] | a:681 [G] | F:51 [ILE] | A:673 [A] | ❌ 7K00_F_A |
| f:4 [TYR] | a:745 [U] | F:4 [TYR] | A:737 [C] | ❌ 6S0X_f_a |
| f:77 [GLN] | a:745 [U] | F:75 [GLU] | A:737 [C] | ❌ 6S0X_f_a |
| f:81 [LYS] | a:679 [G] | F:79 [ARG] | A:671 [G] | ❌ 6S0X_f_a |
| f:93 [ARG] | a:744 [U] | F:91 [ARG] | A:736 [C] | ❌ 6S0X_f_a |
| f:2 [ARG] | a:748 [U] | F:2 [ARG] | A:740 [U] | ❌ 7K00_A:740 no longer at interface |
| f:77 [GLN] | a:678 [A] | F:75 [GLU] | A:670 [G] | ❌ 7K00_A:670 no longer at interface |
| f:50 [TYR] | a:682 [G] | F:49 [TYR] | A:674 [G] | ❌ 6S0X_a:682 no longer at interface |
| f:51 [GLU] | a:682 [G] | F:50 [PRO] | A:674 [G] | ❌ 6S0X_a:682 no longer at interface |
| f:52 [ILE] | a:682 [G] | F:51 [ILE] | A:674 [G] | ❌ 6S0X_a:682 no longer at interface |
| f:54 [ASP] | a:719 [G] | F:53 [LYS] | A:711 [G] | ❌ 6S0X_f:54, 6S0X_a:719 no longer at interface |
| f:88 [ARG] | a:682 [G] | F:86 [ARG] | A:674 [G] | ❌ 6S0X_a:682 no longer at interface |
| f:90 [MET] | a:743 [C] | F:88 [MET] | A:735 [C] | ❌ 6S0X_a:743 no longer at interface |
| f:94 [GLU] | a:670 [A] | F:93 [LYS] | A:662 [U] | ❌ 6S0X_f:94, 6S0X_a:670 no longer at interface |
| f:94 [GLU] | a:671 [A] | F:93 [LYS] | A:663 [A] | ❌ 6S0X_f:94, 6S0X_a:671 no longer at interface |
| f:87 [ILE] | a:680 [U] | F:85 [ILE] | A:672 [U] | ❌ 7K00_F:85 no longer at interface |
| f:87 [ILE] | a:681 [G] | F:85 [ILE] | A:673 [A] | ❌ 7K00_F:85 no longer at interface |
| f:89 [TYR] | a:679 [G] | F:87 [SER] | A:671 [G] | ❌ 7K00_F:87 no longer at interface |
| f:54 [ASP] | a:718 [G] | F:53 [LYS] | A:710 [G] | ❌ 6S0X_f:54 no longer at interface |
| f:70 [ASN] | a:746 [U] | F:68 [GLN] | A:738 [C] | ❌ 6S0X_f:70 no longer at interface |
| f:70 [ASN] | a:747 [C] | F:68 [GLN] | A:739 [C] | ❌ 6S0X_f:70 no longer at interface |
| f:74 [ASP] | a:745 [U] | F:72 [ASP] | A:737 [C] | ❌ 6S0X_f:74 no longer at interface |
Export the table of contacts
Properties of this pair
|
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | 0.95 | 2.53 | 0.40 | 0.76 | 0.95 | 0.86 | 0.8 | 0.39 | 0.16 | 0.14 | 0.59 |
Other pairs involving 6S0X_f_a or 7K00_F_A
Total number of entries: 7
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_1f_1a | 7K00_F_A | 0.79 | 0.98 | 1.91 | 0.56 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 4Y4O_1f_1a | 6S0X_f_a | 0.36 | 0.95 | 1.68 | 0.43 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 7K00_F_A | 7RYG_f_a | 0.85 | 0.93 | 1.75 | 0.67 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 6S0X_f_a | 7RYG_f_a | 0.22 | 0.96 | 3.21 | 0.08 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 6S0X_f_a | 7K00_F_A | 0.39 | 0.95 | 2.53 | 0.4 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 4YBB_AF_AA | 7K00_F_A | 0.91 | 0.98 | 2.9 | 0.88 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 4YBB_AF_AA | 6S0X_f_a | 0.21 | 0.96 | 3.66 | 0.07 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |