Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
| 6S0X_f
|
6S0X_a
|
7RYG_f
|
7RYG_a
|
Conserved?
|
|---|---|---|---|---|
| f:81 [LYS] | a:680 [U] | f:79 [ARG] | a:669 [U] | ✔ |
| f:92 [ILE] | a:744 [U] | f:91 [ARG] | a:733 [C] | ✔ |
| f:92 [ILE] | a:745 [U] | f:91 [ARG] | a:734 [A] | ✔ |
| f:87 [ILE] | a:681 [G] | f:86 [ARG] | a:670 [A] | ✔ |
| f:90 [MET] | a:744 [U] | f:89 [ILE] | a:733 [C] | ✔ |
| f:90 [MET] | a:745 [U] | f:89 [ILE] | a:734 [A] | ✔ |
| f:91 [VAL] | a:744 [U] | f:90 [ILE] | a:733 [C] | ✔ |
| f:91 [VAL] | a:745 [U] | f:90 [ILE] | a:734 [A] | ✔ |
| f:87 [ILE] | a:680 [U] | f:86 [ARG] | a:669 [U] | ❌ 7RYG_f_a |
| f:50 [TYR] | a:680 [U] | f:49 [TYR] | a:669 [U] | ❌ 7RYG_f_a |
| f:50 [TYR] | a:681 [G] | f:49 [TYR] | a:670 [A] | ❌ 7RYG_f_a |
| f:89 [TYR] | a:679 [G] | f:88 [LEU] | a:668 [G] | ❌ 7RYG_f_a |
| f:81 [LYS] | a:679 [G] | f:79 [ARG] | a:668 [G] | ❌ 6S0X_f_a |
| f:89 [TYR] | a:744 [U] | f:88 [LEU] | a:733 [C] | ❌ 6S0X_f_a |
| f:92 [ILE] | a:747 [C] | f:91 [ARG] | a:736 [C] | ❌ 6S0X_f_a |
| f:92 [ILE] | a:746 [U] | f:91 [ARG] | a:735 [U] | ❌ 6S0X_f_a |
| f:2 [ARG] | a:748 [U] | f:1 [MET] | a:737 [U] | ❌ 7RYG_f:1, 7RYG_a:737 no longer at interface |
| f:77 [GLN] | a:678 [A] | f:75 [GLU] | a:667 [G] | ❌ 7RYG_f:75, 7RYG_a:667 no longer at interface |
| f:50 [TYR] | a:682 [G] | f:49 [TYR] | a:671 [G] | ❌ 6S0X_a:682 no longer at interface |
| f:87 [ILE] | a:682 [G] | f:86 [ARG] | a:671 [G] | ❌ 6S0X_a:682 no longer at interface |
| f:89 [TYR] | a:743 [C] | f:88 [LEU] | a:732 [C] | ❌ 6S0X_a:743 no longer at interface |
| f:93 [ARG] | a:745 [U] | f:92 [ARG] | a:734 [A] | ❌ 7RYG_f:92 no longer at interface |
| f:93 [ARG] | a:746 [U] | f:92 [ARG] | a:735 [U] | ❌ 7RYG_f:92 no longer at interface |
| f:93 [ARG] | a:747 [C] | f:92 [ARG] | a:736 [C] | ❌ 7RYG_f:92 no longer at interface |
| f:2 [ARG] | a:746 [U] | f:1 [MET] | a:735 [U] | ❌ 7RYG_f:1 no longer at interface |
| f:2 [ARG] | a:747 [C] | f:1 [MET] | a:736 [C] | ❌ 7RYG_f:1 no longer at interface |
| f:51 [GLU] | a:718 [G] | f:50 [PRO] | a:707 [G] | ❌ 7RYG_f:50 no longer at interface |
| f:77 [GLN] | a:679 [G] | f:75 [GLU] | a:668 [G] | ❌ 7RYG_f:75 no longer at interface |
| f:88 [ARG] | a:679 [G] | f:87 [ASN] | a:668 [G] | ❌ 7RYG_f:87 no longer at interface |
| f:88 [ARG] | a:680 [U] | f:87 [ASN] | a:669 [U] | ❌ 7RYG_f:87 no longer at interface |
| f:88 [ARG] | a:681 [G] | f:87 [ASN] | a:670 [A] | ❌ 7RYG_f:87 no longer at interface |
| f:4 [TYR] | a:746 [U] | f:3 [HIS] | a:735 [U] | ❌ 7RYG_f:3 no longer at interface |
| f:52 [ILE] | a:681 [G] | f:51 [ILE] | a:670 [A] | ❌ 7RYG_f:51 no longer at interface |
| f:3 [THR] | a:747 [C] | f:2 [ARG] | a:736 [C] | ❌ 6S0X_f:3 no longer at interface |
| f:3 [THR] | a:746 [U] | f:2 [ARG] | a:735 [U] | ❌ 6S0X_f:3 no longer at interface |
| f:5 [GLU] | a:745 [U] | f:4 [TYR] | a:734 [A] | ❌ 6S0X_f:5 no longer at interface |
| f:5 [GLU] | a:746 [U] | f:4 [TYR] | a:735 [U] | ❌ 6S0X_f:5 no longer at interface |
| f:70 [ASN] | a:746 [U] | f:68 [GLN] | a:735 [U] | ❌ 6S0X_f:70 no longer at interface |
| f:73 [THR] | a:745 [U] | f:71 [LEU] | a:734 [A] | ❌ 6S0X_f:73 no longer at interface |
| f:73 [THR] | a:746 [U] | f:71 [LEU] | a:735 [U] | ❌ 6S0X_f:73 no longer at interface |
Export the table of contacts
Properties of this pair
|
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | 0.96 | 3.21 | 0.08 | 0.75 | 0.96 | 0.58 | 0.8 | 0.22 | 0.18 | 0.00 | 0.75 |
Other pairs involving 6S0X_f_a or 7RYG_f_a
Total number of entries: 7
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_1f_1a | 6S0X_f_a | 0.36 | 0.95 | 1.68 | 0.43 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 4YBB_AF_AA | 6S0X_f_a | 0.21 | 0.96 | 3.66 | 0.07 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 6S0X_f_a | 7K00_F_A | 0.39 | 0.95 | 2.53 | 0.4 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 4Y4O_1f_1a | 7RYG_f_a | 0.80 | 0.91 | 3.39 | 0.5 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 7K00_F_A | 7RYG_f_a | 0.85 | 0.93 | 1.75 | 0.67 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 6S0X_f_a | 7RYG_f_a | 0.22 | 0.96 | 3.21 | 0.08 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 4YBB_AF_AA | 7RYG_f_a | 0.85 | 0.97 | 2.25 | 0.67 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |