Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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Focus on
InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
| 7K00_F
|
7K00_A
|
7RYG_f
|
7RYG_a
|
Conserved?
|
|---|---|---|---|---|
| F:68 [GLN] | A:738 [C] | f:68 [GLN] | a:735 [U] | ✔ |
| F:89 [VAL] | A:736 [C] | f:89 [ILE] | a:733 [C] | ✔ |
| F:89 [VAL] | A:737 [C] | f:89 [ILE] | a:734 [A] | ✔ |
| F:90 [MET] | A:736 [C] | f:90 [ILE] | a:733 [C] | ✔ |
| F:90 [MET] | A:737 [C] | f:90 [ILE] | a:734 [A] | ✔ |
| F:88 [MET] | A:735 [C] | f:88 [LEU] | a:732 [C] | ✔ |
| F:88 [MET] | A:736 [C] | f:88 [LEU] | a:733 [C] | ✔ |
| F:86 [ARG] | A:673 [A] | f:86 [ARG] | a:670 [A] | ✔ |
| F:86 [ARG] | A:674 [G] | f:86 [ARG] | a:671 [G] | ✔ |
| F:2 [ARG] | A:738 [C] | f:2 [ARG] | a:735 [U] | ✔ |
| F:2 [ARG] | A:739 [C] | f:2 [ARG] | a:736 [C] | ✔ |
| F:49 [TYR] | A:674 [G] | f:49 [TYR] | a:671 [G] | ✔ |
| F:91 [ARG] | A:736 [C] | f:91 [ARG] | a:733 [C] | ✔ |
| F:91 [ARG] | A:737 [C] | f:91 [ARG] | a:734 [A] | ✔ |
| F:91 [ARG] | A:738 [C] | f:91 [ARG] | a:735 [U] | ✔ |
| F:53 [LYS] | A:710 [G] | f:53 [LYS] | a:707 [G] | ✔ |
| F:53 [LYS] | A:711 [G] | f:53 [LYS] | a:708 [G] | ✔ |
| F:4 [TYR] | A:737 [C] | f:4 [TYR] | a:734 [A] | ✔ |
| F:4 [TYR] | A:738 [C] | f:4 [TYR] | a:735 [U] | ✔ |
| F:79 [ARG] | A:671 [G] | f:79 [ARG] | a:668 [G] | ✔ |
| F:79 [ARG] | A:672 [U] | f:79 [ARG] | a:669 [U] | ✔ |
| F:68 [GLN] | A:739 [C] | f:68 [GLN] | a:736 [C] | ❌ 7RYG_f_a |
| F:49 [TYR] | A:673 [A] | f:49 [TYR] | a:670 [A] | ❌ 7RYG_f_a |
| F:91 [ARG] | A:739 [C] | f:91 [ARG] | a:736 [C] | ❌ 7K00_F_A |
| F:93 [LYS] | A:662 [U] | f:93 [GLU] | a:659 [G] | ❌ 7RYG_f:93, 7RYG_a:659 no longer at interface |
| F:93 [LYS] | A:663 [A] | f:93 [GLU] | a:660 [A] | ❌ 7RYG_f:93, 7RYG_a:660 no longer at interface |
| F:75 [GLU] | A:737 [C] | f:75 [GLU] | a:734 [A] | ❌ 7RYG_f:75 no longer at interface |
| F:72 [ASP] | A:737 [C] | f:72 [ASP] | a:734 [A] | ❌ 7RYG_f:72 no longer at interface |
| F:50 [PRO] | A:674 [G] | f:50 [PRO] | a:671 [G] | ❌ 7RYG_f:50 no longer at interface |
| F:51 [ILE] | A:674 [G] | f:51 [ILE] | a:671 [G] | ❌ 7RYG_f:51 no longer at interface |
| F:71 [ILE] | A:737 [C] | f:71 [LEU] | a:734 [A] | ❌ 7K00_F:71 no longer at interface |
| F:71 [ILE] | A:738 [C] | f:71 [LEU] | a:735 [U] | ❌ 7K00_F:71 no longer at interface |
Export the table of contacts
Properties of this pair
|
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | 0.93 | 1.75 | 0.67 | 0.95 | 0.93 | 0.92 | 1.0 | 0.85 | 0.75 | 0.38 | 0.73 |
Other pairs involving 7K00_F_A or 7RYG_f_a
Total number of entries: 7
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_1f_1a | 7K00_F_A | 0.79 | 0.98 | 1.91 | 0.56 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 4Y4O_1f_1a | 7RYG_f_a | 0.80 | 0.91 | 3.39 | 0.5 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 7K00_F_A | 7RYG_f_a | 0.85 | 0.93 | 1.75 | 0.67 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 6S0X_f_a | 7RYG_f_a | 0.22 | 0.96 | 3.21 | 0.08 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 6S0X_f_a | 7K00_F_A | 0.39 | 0.95 | 2.53 | 0.4 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 4YBB_AF_AA | 7K00_F_A | 0.91 | 0.98 | 2.9 | 0.88 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 4YBB_AF_AA | 7RYG_f_a | 0.85 | 0.97 | 2.25 | 0.67 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |