Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7RYG_f
|
7RYG_a
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| f:2 [ARG] | a:735 [U] | 3.03 | a:665 [A] | 71.38 | ||
| f:2 [ARG] | a:736 [C] | 3.6 | a:664 [G] | 71.38 | ||
| f:4 [TYR] | a:734 [A] | 3.61 | a:666 [U] | 98.85 | ||
| f:4 [TYR] | a:735 [U] | 2.25 | a:665 [A] | 98.85 | ||
| f:49 [TYR] | a:671 [G] | 4.87 | a:713 [A] | 96.88 | ||
| f:53 [LYS] | a:707 [G] | 3.55 | a:677 [C] | 81.91 | ||
| f:53 [LYS] | a:708 [G] | 4.27 | a:676 [C] | 81.91 | ||
| f:68 [GLN] | a:735 [U] | 3.34 | a:665 [A] | 49.3 | ||
| f:71 [LEU] | a:734 [A] | 4.09 | a:666 [U] | 65.13 | ||
| f:71 [LEU] | a:735 [U] | 4.52 | a:665 [A] | 65.13 | ||
| f:79 [ARG] | a:668 [G] | 4.05 | a:732 [C] | 71.55 | ||
| f:79 [ARG] | a:669 [U] | 4.72 | a:731 [G] | 71.55 | ||
| f:86 [ARG] | a:670 [A] | 3.31 | a:714 [U] | 98.54 | ||
| f:86 [ARG] | a:671 [G] | 4.09 | a:713 [A] | 98.54 | ||
| f:88 [LEU] | a:732 [C] | 4.53 | a:668 [G] | 76.1 | ||
| f:88 [LEU] | a:733 [C] | 4.65 | a:667 [G] | 76.1 | ||
| f:89 [ILE] | a:733 [C] | 2.8 | a:667 [G] | sugar:BB | 74.4 | |
| f:89 [ILE] | a:734 [A] | 3.73 | a:666 [U] | 74.4 | ||
| f:90 [ILE] | a:733 [C] | 3.93 | a:667 [G] | 77.19 | ||
| f:90 [ILE] | a:734 [A] | 3.36 | a:666 [U] | 77.19 | ||
| f:91 [ARG] | a:733 [C] | 4.58 | a:667 [G] | 68.0 | ||
| f:91 [ARG] | a:734 [A] | 2.62 | a:666 [U] | 68.0 | ||
| f:91 [ARG] | a:735 [U] | 3.47 | a:665 [A] | 68.0 | ||
| f:91 [ARG] | a:736 [C] | 4.69 | a:664 [G] | 68.0 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group85 | 7RYG_f_a | f: 30s ribosomal protein s6, Acinetobacter baumannii (strain ab0057) (natural) a: 16s ribosomal RNA, Acinetobacter baumannii ab0057 (natural) | B7IBC1 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 4
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_1f_1a | 7RYG_f_a | 0.80 | 0.91 | 3.39 | 0.5 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 7K00_F_A | 7RYG_f_a | 0.85 | 0.93 | 1.75 | 0.67 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 6S0X_f_a | 7RYG_f_a | 0.22 | 0.96 | 3.21 | 0.08 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |
| 4YBB_AF_AA | 7RYG_f_a | 0.85 | 0.97 | 2.25 | 0.67 | Ribosomal protein S6 | Bacterial small subunit ribosomal RNA | compare |