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All interfaces > All interologs > Interface groups > group86 > 4Y4O_1h_1a

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Licorice
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RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_1h
4Y4O_1a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1h:2 [LEU] 1a:587 [G] 3.78 28.24
1h:2 [LEU] 1a:588 [G] 3.78 1a:651 [C] 28.24
1h:2 [LEU] 1a:824 [C] 3.38 1a:876 [G] sugar:BB 28.24
1h:2 [LEU] 1a:825 [G] 3.42 1a:875 [C] 28.24
1h:3 [THR] 1a:586 [C] 4.58 1a:755 [G] 71.96
1h:3 [THR] 1a:587 [G] 3.46 71.96
1h:3 [THR] 1a:588 [G] 4.61 1a:651 [C] 71.96
1h:3 [THR] 1a:823 [G] 3.85 1a:877 [C] 71.96
1h:3 [THR] 1a:877 [C] 2.6 1a:823 [G] base:SC, sugar:SC 71.96
1h:3 [THR] 1a:878 [G] 3.58 1a:822 [C] 71.96
1h:4 [ASP] 1a:877 [C] 3.46 1a:823 [G] 86.78
1h:5 [PRO] 1a:587 [G] 4.83 49.4
1h:5 [PRO] 1a:588 [G] 3.78 1a:651 [C] 49.4
1h:5 [PRO] 1a:589 [C] 3.67 1a:650 [G] 49.4
1h:7 [ALA] 1a:876 [G] 3.38 1a:824 [C] 83.98
1h:7 [ALA] 1a:877 [C] 3.81 1a:823 [G] 83.98
1h:8 [ASP] 1a:825 [G] 2.44 1a:875 [C] sugar:SC 85.5
1h:8 [ASP] 1a:826 [C] 4.63 1a:874 [G] 85.5
1h:8 [ASP] 1a:876 [G] 4.58 1a:824 [C] 85.5
1h:11 [THR] 1a:825 [G] 3.25 1a:875 [C] 81.94
1h:11 [THR] 1a:826 [C] 4.37 1a:874 [G] 81.94
1h:11 [THR] 1a:875 [C] 3.29 1a:825 [G] 81.94
1h:11 [THR] 1a:876 [G] 2.91 1a:824 [C] sugar:SC 81.94
1h:12 [ARG] 1a:825 [G] 3.26 1a:875 [C] 69.6
1h:12 [ARG] 1a:826 [C] 3.27 1a:874 [G] 69.6
1h:14 [ARG] 1a:875 [C] 2.54 1a:825 [G] sugar:SC 80.61
1h:14 [ARG] 1a:876 [G] 3.27 1a:824 [C] 80.61
1h:15 [ASN] 1a:825 [G] 4.31 1a:875 [C] 98.88
1h:15 [ASN] 1a:826 [C] 2.71 1a:874 [G] base:SC, sugar:SC 98.88
1h:15 [ASN] 1a:827 [U] 3.52 1a:872 [A] 98.88
1h:15 [ASN] 1a:874 [G] 3.77 1a:826 [C] 98.88
1h:15 [ASN] 1a:875 [C] 3.14 1a:825 [G] base:SC, sugar:SC 98.88
1h:18 [ARG] 1a:860 [A] 3.6 1a:869 [G] 41.84
1h:19 [VAL] 1a:827 [U] 3.79 1a:872 [A] 70.03
1h:19 [VAL] 1a:828 [A] 4.73 1a:858 [G] 70.03
1h:19 [VAL] 1a:859 [A] 4.03 70.03
1h:19 [VAL] 1a:860 [A] 3.74 1a:869 [G] 70.03
1h:21 [LYS] 1a:827 [U] 4.4 1a:872 [A] 67.89
1h:21 [LYS] 1a:828 [A] 3.01 1a:858 [G] 67.89
1h:28 [ALA] 1a:589 [C] 3.9 1a:650 [G] 31.59
1h:28 [ALA] 1a:590 [C] 4.69 1a:649 [G] 31.59
1h:29 [SER] 1a:589 [C] 3.76 1a:650 [G] 88.23
1h:29 [SER] 1a:590 [C] 2.76 1a:649 [G] 88.23
1h:30 [ARG] 1a:589 [C] 4.8 1a:650 [G] 72.73
1h:30 [ARG] 1a:590 [C] 2.67 1a:649 [G] 72.73
1h:30 [ARG] 1a:591 [U] 4.96 1a:648 [A] 72.73
1h:31 [PHE] 1a:590 [C] 4.72 1a:649 [G] 37.4
1h:31 [PHE] 1a:642 [A] 3.44 37.4
1h:31 [PHE] 1a:643 [C] 3.63 1a:597 [G] 37.4
1h:32 [LYS] 1a:589 [C] 3.73 1a:650 [G] 64.68
1h:56 [LYS] 1a:652 [U] 3.51 1a:753 [A] 44.41
1h:56 [LYS] 1a:653 [A] 2.54 44.41
1h:57 [PRO] 1a:653 [A] 3.53 46.39
1h:75 [ARG] 1a:860 [A] 3.26 1a:869 [G] 69.56
1h:75 [ARG] 1a:861 [G] 2.71 1a:868 [C] 69.56
1h:85 [ARG] 1a:877 [C] 4.93 1a:823 [G] 77.57
1h:88 [LYS] 1a:877 [C] 2.77 1a:823 [G] 72.88
1h:88 [LYS] 1a:878 [G] 3.24 1a:822 [C] 72.88
1h:89 [PRO] 1a:586 [C] 3.18 1a:755 [G] 86.46
1h:89 [PRO] 1a:587 [G] 3.56 86.46
1h:89 [PRO] 1a:877 [C] 3.66 1a:823 [G] 86.46
1h:89 [PRO] 1a:878 [G] 3.69 1a:822 [C] 86.46
1h:89 [PRO] 1a:879 [C] 4.82 1a:821 [G] 86.46
1h:90 [GLY] 1a:586 [C] 4.59 1a:755 [G] 79.76
1h:90 [GLY] 1a:877 [C] 4.73 1a:823 [G] 79.76
1h:90 [GLY] 1a:878 [G] 2.86 1a:822 [C] 79.76
1h:90 [GLY] 1a:879 [C] 3.59 1a:821 [G] 79.76
1h:91 [ARG] 1a:564 [C] 2.6 sugar:SC 51.09
1h:91 [ARG] 1a:565 [U] 4.73 1a:300 [A] 51.09
1h:91 [ARG] 1a:878 [G] 4.22 1a:822 [C] 51.09
1h:92 [ARG] 1a:587 [G] 2.91 91.34
1h:92 [ARG] 1a:643 [C] 3.64 1a:597 [G] 91.34
1h:92 [ARG] 1a:644 [G] 3.66 1a:596 [C] 91.34
1h:94 [TYR] 1a:597 [G] 2.93 1a:643 [C] base:SC 90.06
1h:94 [TYR] 1a:598 [U] 3.45 1a:640 [A] 90.06
1h:94 [TYR] 1a:599 [C] 4.66 1a:639 [G] 90.06
1h:94 [TYR] 1a:643 [C] 4.06 1a:597 [G] 90.06
1h:94 [TYR] 1a:644 [G] 4.18 1a:596 [C] 90.06
1h:95 [VAL] 1a:599 [C] 3.32 1a:639 [G] 32.55
1h:96 [GLY] 1a:599 [C] 3.36 1a:639 [G] 54.31
1h:96 [GLY] 1a:600 [C] 3.18 1a:638 [G] 54.31
1h:97 [VAL] 1a:599 [C] 3.65 1a:639 [G] 42.84
1h:97 [VAL] 1a:600 [C] 2.6 1a:638 [G] 42.84
1h:98 [LYS] 1a:600 [C] 4.35 1a:638 [G] 51.02
1h:98 [LYS] 1a:631 [G] 3.94 51.02
1h:98 [LYS] 1a:632 [A] 2.68 1a:606 [G] 51.02
1h:99 [GLU] 1a:599 [C] 4.55 1a:639 [G] 48.31
1h:102 [ARG] 1a:4 [U] 3.11 base/AA stacks 47.39
1h:105 [ARG] 1a:4 [U] 2.99 base/AA stacks 59.84
1h:113 [SER] 1a:642 [A] 2.38 base:SC, sugar:SC 94.54
1h:113 [SER] 1a:643 [C] 3.2 1a:597 [G] sugar:SC 94.54
1h:114 [THR] 1a:642 [A] 2.95 99.0
1h:115 [SER] 1a:599 [C] 3.91 1a:639 [G] 89.39
1h:115 [SER] 1a:639 [G] 4.57 1a:599 [C] 89.39
1h:115 [SER] 1a:640 [A] 2.39 1a:598 [U] sugar:BB 89.39
1h:115 [SER] 1a:641 [U] 3.48 89.39
1h:115 [SER] 1a:642 [A] 3.47 89.39
1h:116 [LYS] 1a:640 [A] 4.4 1a:598 [U] 60.06
1h:117 [GLY] 1a:642 [A] 4.06 97.77
1h:118 [VAL] 1a:642 [A] 4.2 81.84
1h:128 [GLY] 1a:600 [C] 3.21 1a:638 [G] 54.16
1h:129 [VAL] 1a:599 [C] 3.5 1a:639 [G] 67.78
1h:129 [VAL] 1a:600 [C] 3.83 1a:638 [G] 67.78
1h:130 [GLY] 1a:599 [C] 2.65 1a:639 [G] sugar:BB 98.06
1h:130 [GLY] 1a:600 [C] 4.02 1a:638 [G] 98.06
1h:131 [GLY] 1a:598 [U] 4.44 1a:640 [A] 98.78
1h:131 [GLY] 1a:599 [C] 3.66 1a:639 [G] 98.78
1h:131 [GLY] 1a:642 [A] 4.93 98.78
1h:132 [GLU] 1a:597 [G] 4.86 1a:643 [C] 92.1
1h:132 [GLU] 1a:598 [U] 4.78 1a:640 [A] 92.1
1h:132 [GLU] 1a:642 [A] 4.6 92.1
1h:132 [GLU] 1a:643 [C] 2.83 1a:597 [G] sugar:SC 92.1
1h:132 [GLU] 1a:644 [G] 4.5 1a:596 [C] 92.1

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group86 4Y4O_1h_1a 1h: 30s ribosomal protein s8, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1a: 16s ribosomal RNA, Thermus thermophilus hb8 (natural) P0DOY9 Ribosomal protein S8, N-terminal domain & Ribosomal protein S8, C-terminal domain Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1h_1a 7O7Y_Av_A2 0.70 0.93 1.74 0.24 Ribosomal protein S8, N-terminal domain & Ribosomal protein S8, C-terminal domain compare
4Y4O_1h_1a 7RYG_h_a 0.82 0.91 1.63 0.58 Ribosomal protein S8, N-terminal domain & Ribosomal protein S8, C-terminal domain Bacterial small subunit ribosomal RNA compare
4Y4O_1h_1a 6S0X_h_a 0.71 0.95 2.68 0.61 Ribosomal protein S8, N-terminal domain & Ribosomal protein S8, C-terminal domain Bacterial small subunit ribosomal RNA compare
4Y4O_1h_1a 7K00_H_A 0.84 0.98 0.94 0.46 Ribosomal protein S8, N-terminal domain & Ribosomal protein S8, C-terminal domain Bacterial small subunit ribosomal RNA compare