RNAprotDB

All interfaces > All interologs > Interface groups > group86 > 4Y4O_1h_1a vs 6S0X_h_a

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

4Y4O_1h
4Y4O_1a
6S0X_h
6S0X_a
Conserved?
1h:3 [THR] 1a:586 [C] h:4 [THR] a:594 [C] ✔
1h:3 [THR] 1a:587 [G] h:4 [THR] a:595 [G] ✔
1h:3 [THR] 1a:588 [G] h:4 [THR] a:596 [G] ✔
1h:3 [THR] 1a:877 [C] h:4 [THR] a:886 [C] ✔
1h:3 [THR] 1a:878 [G] h:4 [THR] a:887 [U] ✔
1h:94 [TYR] 1a:597 [G] h:88 [TYR] a:605 [G] ✔
1h:94 [TYR] 1a:598 [U] h:88 [TYR] a:606 [U] ✔
1h:94 [TYR] 1a:599 [C] h:88 [TYR] a:607 [C] ✔
1h:130 [GLY] 1a:599 [C] h:124 [GLY] a:607 [C] ✔
1h:130 [GLY] 1a:600 [C] h:124 [GLY] a:608 [U] ✔
1h:15 [ASN] 1a:825 [G] h:16 [ASN] a:833 [G] ✔
1h:15 [ASN] 1a:826 [C] h:16 [ASN] a:834 [C] ✔
1h:15 [ASN] 1a:827 [U] h:16 [ASN] a:835 [U] ✔
1h:15 [ASN] 1a:874 [G] h:16 [ASN] a:883 [G] ✔
1h:15 [ASN] 1a:875 [C] h:16 [ASN] a:884 [C] ✔
1h:5 [PRO] 1a:589 [C] h:6 [PRO] a:597 [U] ✔
1h:131 [GLY] 1a:598 [U] h:125 [GLY] a:606 [U] ✔
1h:131 [GLY] 1a:599 [C] h:125 [GLY] a:607 [C] ✔
1h:115 [SER] 1a:640 [A] h:109 [SER] a:648 [A] ✔
1h:115 [SER] 1a:641 [U] h:109 [SER] a:649 [A] ✔
1h:115 [SER] 1a:642 [A] h:109 [SER] a:650 [A] ✔
1h:11 [THR] 1a:825 [G] h:12 [THR] a:833 [G] ✔
1h:11 [THR] 1a:875 [C] h:12 [THR] a:884 [C] ✔
1h:11 [THR] 1a:876 [G] h:12 [THR] a:885 [A] ✔
1h:14 [ARG] 1a:875 [C] h:15 [ARG] a:884 [C] ✔
1h:14 [ARG] 1a:876 [G] h:15 [ARG] a:885 [A] ✔
1h:19 [VAL] 1a:827 [U] h:20 [VAL] a:835 [U] ✔
1h:88 [LYS] 1a:877 [C] h:82 [LYS] a:886 [C] ✔
1h:88 [LYS] 1a:878 [G] h:82 [LYS] a:887 [U] ✔
1h:96 [GLY] 1a:599 [C] h:90 [LYS] a:607 [C] ✔
1h:96 [GLY] 1a:600 [C] h:90 [LYS] a:608 [U] ✔
1h:28 [ALA] 1a:589 [C] h:29 [ALA] a:597 [U] ✔
1h:28 [ALA] 1a:590 [C] h:29 [ALA] a:598 [U] ✔
1h:56 [LYS] 1a:653 [A] h:57 [GLN] a:661 [U] ✔
1h:29 [SER] 1a:590 [C] h:30 [SER] a:598 [U] ✔
1h:8 [ASP] 1a:825 [G] h:9 [ASP] a:833 [G] ✔
1h:8 [ASP] 1a:876 [G] h:9 [ASP] a:885 [A] ✔
1h:128 [GLY] 1a:600 [C] h:122 [ASN] a:608 [U] ✔
1h:18 [ARG] 1a:860 [A] h:19 [MET] a:869 [A] ✔
1h:31 [PHE] 1a:642 [A] h:32 [ILE] a:650 [A] ✔
1h:31 [PHE] 1a:643 [C] h:32 [ILE] a:651 [C] ✔
1h:132 [GLU] 1a:597 [G] h:126 [GLU] a:605 [G] ✔
1h:132 [GLU] 1a:598 [U] h:126 [GLU] a:606 [U] ✔
1h:132 [GLU] 1a:642 [A] h:126 [GLU] a:650 [A] ✔
1h:132 [GLU] 1a:643 [C] h:126 [GLU] a:651 [C] ✔
1h:4 [ASP] 1a:877 [C] h:5 [ASP] a:886 [C] ✔
1h:95 [VAL] 1a:599 [C] h:89 [ALA] a:607 [C] ✔
1h:116 [LYS] 1a:640 [A] h:110 [GLU] a:648 [A] ✔
1h:114 [THR] 1a:642 [A] h:108 [THR] a:650 [A] ✔
1h:30 [ARG] 1a:590 [C] h:31 [ASN] a:598 [U] ✔
1h:30 [ARG] 1a:591 [U] h:31 [ASN] a:599 [U] ✔
1h:2 [LEU] 1a:587 [G] h:3 [MET] a:595 [G] ✔
1h:2 [LEU] 1a:588 [G] h:3 [MET] a:596 [G] ✔
1h:2 [LEU] 1a:824 [C] h:3 [MET] a:832 [U] ✔
1h:97 [VAL] 1a:599 [C] h:91 [ALA] a:607 [C] ✔
1h:97 [VAL] 1a:600 [C] h:91 [ALA] a:608 [U] ✔
1h:98 [LYS] 1a:600 [C] h:92 [SER] a:608 [U] ✔
1h:113 [SER] 1a:642 [A] h:107 [SER] a:650 [A] ✔
1h:12 [ARG] 1a:825 [G] h:13 [ARG] a:833 [G] ✔
1h:12 [ARG] 1a:826 [C] h:13 [ARG] a:834 [C] ✔
1h:89 [PRO] 1a:586 [C] h:83 [PRO] a:594 [C] ✔
1h:89 [PRO] 1a:587 [G] h:83 [PRO] a:595 [G] ✔
1h:89 [PRO] 1a:878 [G] h:83 [PRO] a:887 [U] ✔
1h:89 [PRO] 1a:879 [C] h:83 [PRO] a:888 [C] ✔
1h:92 [ARG] 1a:643 [C] h:86 [ARG] a:651 [C] ✔
1h:92 [ARG] 1a:644 [G] h:86 [ARG] a:652 [U] ✔
1h:105 [ARG] 1a:4 [U] h:99 [ASN] a:5 [A] ✔
1h:7 [ALA] 1a:876 [G] h:8 [ALA] a:885 [A] ✔
1h:7 [ALA] 1a:877 [C] h:8 [ALA] a:886 [C] ✔
1h:118 [VAL] 1a:642 [A] h:112 [VAL] a:650 [A] ✔
1h:129 [VAL] 1a:599 [C] h:123 [VAL] a:607 [C] ✔
1h:129 [VAL] 1a:600 [C] h:123 [VAL] a:608 [U] ✔
1h:3 [THR] 1a:823 [G] h:4 [THR] a:831 [G] ❌ 6S0X_h_a
1h:94 [TYR] 1a:643 [C] h:88 [TYR] a:651 [C] ❌ 6S0X_h_a
1h:94 [TYR] 1a:644 [G] h:88 [TYR] a:652 [U] ❌ 6S0X_h_a
1h:32 [LYS] 1a:589 [C] h:33 [LYS] a:597 [U] ❌ 6S0X_h_a
1h:5 [PRO] 1a:587 [G] h:6 [PRO] a:595 [G] ❌ 6S0X_h_a
1h:5 [PRO] 1a:588 [G] h:6 [PRO] a:596 [G] ❌ 6S0X_h_a
1h:131 [GLY] 1a:642 [A] h:125 [GLY] a:650 [A] ❌ 6S0X_h_a
1h:115 [SER] 1a:599 [C] h:109 [SER] a:607 [C] ❌ 6S0X_h_a
1h:11 [THR] 1a:826 [C] h:12 [THR] a:834 [C] ❌ 6S0X_h_a
1h:19 [VAL] 1a:860 [A] h:20 [VAL] a:869 [A] ❌ 6S0X_h_a
1h:29 [SER] 1a:589 [C] h:30 [SER] a:597 [U] ❌ 6S0X_h_a
1h:8 [ASP] 1a:826 [C] h:9 [ASP] a:834 [C] ❌ 6S0X_h_a
1h:31 [PHE] 1a:590 [C] h:32 [ILE] a:598 [U] ❌ 6S0X_h_a
1h:132 [GLU] 1a:644 [G] h:126 [GLU] a:652 [U] ❌ 6S0X_h_a
1h:30 [ARG] 1a:589 [C] h:31 [ASN] a:597 [U] ❌ 6S0X_h_a
1h:2 [LEU] 1a:825 [G] h:3 [MET] a:833 [G] ❌ 6S0X_h_a
1h:113 [SER] 1a:643 [C] h:107 [SER] a:651 [C] ❌ 6S0X_h_a
1h:89 [PRO] 1a:877 [C] h:83 [PRO] a:886 [C] ❌ 6S0X_h_a
1h:92 [ARG] 1a:587 [G] h:86 [ARG] a:595 [G] ❌ 6S0X_h_a
1h:113 [SER] 1a:598 [U] h:107 [SER] a:606 [U] ❌ 4Y4O_1h_1a
1h:114 [THR] 1a:640 [A] h:108 [THR] a:648 [A] ❌ 4Y4O_1h_1a
1h:114 [THR] 1a:598 [U] h:108 [THR] a:606 [U] ❌ 4Y4O_1h_1a
1h:114 [THR] 1a:599 [C] h:108 [THR] a:607 [C] ❌ 4Y4O_1h_1a
1h:18 [ARG] 1a:861 [G] h:19 [MET] a:870 [G] ❌ 4Y4O_1h_1a
1h:2 [LEU] 1a:877 [C] h:3 [MET] a:886 [C] ❌ 4Y4O_1h_1a
1h:2 [LEU] 1a:589 [C] h:3 [MET] a:597 [U] ❌ 4Y4O_1h_1a
1h:29 [SER] 1a:591 [U] h:30 [SER] a:599 [U] ❌ 4Y4O_1h_1a
1h:30 [ARG] 1a:642 [A] h:31 [ASN] a:650 [A] ❌ 4Y4O_1h_1a
1h:30 [ARG] 1a:643 [C] h:31 [ASN] a:651 [C] ❌ 4Y4O_1h_1a
1h:31 [PHE] 1a:591 [U] h:32 [ILE] a:599 [U] ❌ 4Y4O_1h_1a
1h:32 [LYS] 1a:590 [C] h:33 [LYS] a:598 [U] ❌ 4Y4O_1h_1a
1h:56 [LYS] 1a:590 [C] h:57 [GLN] a:598 [U] ❌ 4Y4O_1h_1a
1h:56 [LYS] 1a:589 [C] h:57 [GLN] a:597 [U] ❌ 4Y4O_1h_1a
1h:95 [VAL] 1a:600 [C] h:89 [ALA] a:608 [U] ❌ 4Y4O_1h_1a
1h:115 [SER] 1a:639 [G] h:109 [SER] a:647 [G] ❌ 6S0X_a:647 no longer at interface
1h:19 [VAL] 1a:828 [A] h:20 [VAL] a:836 [A] ❌ 6S0X_a:836 no longer at interface
1h:19 [VAL] 1a:859 [A] h:20 [VAL] a:868 [C] ❌ 6S0X_a:868 no longer at interface
1h:21 [LYS] 1a:828 [A] h:22 [HIS] a:836 [A] ❌ 6S0X_h:22, 6S0X_a:836 no longer at interface
1h:56 [LYS] 1a:652 [U] h:57 [GLN] a:660 [U] ❌ 6S0X_a:660 no longer at interface
1h:91 [ARG] 1a:564 [C] h:85 [LEU] a:572 [U] ❌ 6S0X_h:85, 6S0X_a:572 no longer at interface
1h:91 [ARG] 1a:565 [U] h:85 [LEU] a:573 [U] ❌ 6S0X_h:85, 6S0X_a:573 no longer at interface
1h:98 [LYS] 1a:631 [G] h:92 [SER] a:639 [G] ❌ 6S0X_a:639 no longer at interface
1h:98 [LYS] 1a:632 [A] h:92 [SER] a:640 [G] ❌ 6S0X_a:640 no longer at interface
1h:128 [GLY] 1a:601 [C] h:122 [ASN] a:609 [G] ❌ 4Y4O_1a:601 no longer at interface
1h:55 [GLY] 1a:651 [C] h:56 [LYS] a:659 [C] ❌ 4Y4O_1h:55, 4Y4O_1a:651 no longer at interface
1h:21 [LYS] 1a:827 [U] h:22 [HIS] a:835 [U] ❌ 6S0X_h:22 no longer at interface
1h:90 [GLY] 1a:586 [C] h:84 [GLY] a:594 [C] ❌ 6S0X_h:84 no longer at interface
1h:90 [GLY] 1a:877 [C] h:84 [GLY] a:886 [C] ❌ 6S0X_h:84 no longer at interface
1h:90 [GLY] 1a:878 [G] h:84 [GLY] a:887 [U] ❌ 6S0X_h:84 no longer at interface
1h:90 [GLY] 1a:879 [C] h:84 [GLY] a:888 [C] ❌ 6S0X_h:84 no longer at interface
1h:102 [ARG] 1a:4 [U] h:96 [LYS] a:5 [A] ❌ 6S0X_h:96 no longer at interface
1h:85 [ARG] 1a:877 [C] h:79 [ARG] a:886 [C] ❌ 6S0X_h:79 no longer at interface
1h:117 [GLY] 1a:642 [A] h:111 [GLY] a:650 [A] ❌ 6S0X_h:111 no longer at interface
1h:57 [PRO] 1a:653 [A] h:58 [GLY] a:661 [U] ❌ 6S0X_h:58 no longer at interface
1h:99 [GLU] 1a:599 [C] h:93 [GLU] a:607 [C] ❌ 6S0X_h:93 no longer at interface
1h:91 [ARG] 1a:878 [G] h:85 [LEU] a:887 [U] ❌ 6S0X_h:85 no longer at interface
1h:34 [GLU] 1a:642 [A] h:35 [GLU] a:650 [A] ❌ 4Y4O_1h:34 no longer at interface
1h:55 [GLY] 1a:653 [A] h:56 [LYS] a:661 [U] ❌ 4Y4O_1h:55 no longer at interface
1h:55 [GLY] 1a:589 [C] h:56 [LYS] a:597 [U] ❌ 4Y4O_1h:55 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein S8, N-terminal domain & Ribosomal protein S8, C-terminal domain Bacterial small subunit ribosomal RNA 0.95 2.68 0.61 0.89 0.95 0.93 0.91 0.71 0.53 0.24 0.42


Other pairs involving 4Y4O_1h_1a or 6S0X_h_a

Total number of entries: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1h_1a 6S0X_h_a 0.71 0.95 2.68 0.61 Ribosomal protein S8, N-terminal domain & Ribosomal protein S8, C-terminal domain Bacterial small subunit ribosomal RNA compare
6S0X_h_a 7K00_H_A 0.72 0.96 2.61 0.53 Ribosomal protein S8, N-terminal domain & Ribosomal protein S8, C-terminal domain Bacterial small subunit ribosomal RNA compare
4Y4O_1h_1a 7K00_H_A 0.84 0.98 0.94 0.46 Ribosomal protein S8, N-terminal domain & Ribosomal protein S8, C-terminal domain Bacterial small subunit ribosomal RNA compare
6S0X_h_a 7O7Y_Av_A2 0.64 0.9 3.15 0.21 Ribosomal protein S8, N-terminal domain & Ribosomal protein S8, C-terminal domain compare
4Y4O_1h_1a 7O7Y_Av_A2 0.70 0.93 1.74 0.24 Ribosomal protein S8, N-terminal domain & Ribosomal protein S8, C-terminal domain compare
6S0X_h_a 7RYG_h_a 0.72 0.97 2.59 0.5 Ribosomal protein S8, N-terminal domain & Ribosomal protein S8, C-terminal domain Bacterial small subunit ribosomal RNA compare
4Y4O_1h_1a 7RYG_h_a 0.82 0.91 1.63 0.58 Ribosomal protein S8, N-terminal domain & Ribosomal protein S8, C-terminal domain Bacterial small subunit ribosomal RNA compare