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All interfaces > All interologs > Interface groups > group86 > 6S0X_h_a

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6S0X_h
6S0X_a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
h:2 [THR] a:595 [G] 3.18 79.25
h:2 [THR] a:596 [G] 4.07 a:659 [C] 79.25
h:2 [THR] a:763 [G] 4.37 a:594 [C] 79.25
h:2 [THR] a:831 [G] 3.71 a:886 [C] 79.25
h:2 [THR] a:832 [U] 3.33 a:885 [A] 79.25
h:3 [MET] a:595 [G] 3.88 52.37
h:3 [MET] a:596 [G] 2.94 a:659 [C] 52.37
h:3 [MET] a:597 [U] 3.94 a:658 [A] 52.37
h:3 [MET] a:832 [U] 4.11 a:885 [A] 52.37
h:3 [MET] a:886 [C] 4.85 a:831 [G] 52.37
h:4 [THR] a:594 [C] 4.27 a:763 [G] 62.52
h:4 [THR] a:595 [G] 3.39 62.52
h:4 [THR] a:596 [G] 4.08 a:659 [C] 62.52
h:4 [THR] a:886 [C] 2.31 a:831 [G] sugar:SC 62.52
h:4 [THR] a:887 [U] 3.32 a:830 [A] 62.52
h:5 [ASP] a:886 [C] 4.02 a:831 [G] 89.51
h:6 [PRO] a:597 [U] 3.71 a:658 [A] 64.39
h:8 [ALA] a:885 [A] 4.48 a:832 [U] 81.24
h:8 [ALA] a:886 [C] 4.82 a:831 [G] 81.24
h:9 [ASP] a:833 [G] 3.12 a:884 [C] sugar:SC, sugar:SC 87.07
h:9 [ASP] a:885 [A] 4.34 a:832 [U] 87.07
h:12 [THR] a:833 [G] 4.63 a:884 [C] 80.93
h:12 [THR] a:884 [C] 4.73 a:833 [G] 80.93
h:12 [THR] a:885 [A] 3.85 a:832 [U] 80.93
h:13 [ARG] a:833 [G] 2.57 a:884 [C] sugar:SC 73.44
h:13 [ARG] a:834 [C] 3.33 a:883 [G] 73.44
h:15 [ARG] a:884 [C] 3.41 a:833 [G] sugar:SC 80.92
h:15 [ARG] a:885 [A] 3.87 a:832 [U] 80.92
h:16 [ASN] a:833 [G] 3.48 a:884 [C] 98.92
h:16 [ASN] a:834 [C] 3.18 a:883 [G] 98.92
h:16 [ASN] a:835 [U] 4.22 98.92
h:16 [ASN] a:883 [G] 4.82 a:834 [C] 98.92
h:16 [ASN] a:884 [C] 3.06 a:833 [G] base:SC, sugar:SC 98.92
h:19 [MET] a:869 [A] 2.89 a:881 [A] 43.4
h:19 [MET] a:870 [G] 4.57 a:877 [C] 43.4
h:20 [VAL] a:835 [U] 4.14 73.89
h:29 [ALA] a:597 [U] 4.51 a:658 [A] 43.41
h:29 [ALA] a:598 [U] 3.64 a:657 [A] 43.41
h:30 [SER] a:598 [U] 3.28 a:657 [A] 90.42
h:30 [SER] a:599 [U] 3.52 90.42
h:31 [ASN] a:598 [U] 4.19 a:657 [A] 66.59
h:31 [ASN] a:599 [U] 2.64 66.59
h:31 [ASN] a:650 [A] 3.02 a:649 [A] sugar:SC 66.59
h:31 [ASN] a:651 [C] 4.44 a:605 [G] 66.59
h:32 [ILE] a:599 [U] 4.81 44.64
h:32 [ILE] a:650 [A] 3.31 a:649 [A] 44.64
h:32 [ILE] a:651 [C] 3.36 a:605 [G] 44.64
h:33 [LYS] a:598 [U] 4.07 a:657 [A] 60.07
h:35 [GLU] a:650 [A] 4.85 a:649 [A] 52.95
h:56 [LYS] a:597 [U] 4.76 a:658 [A] 42.65
h:56 [LYS] a:659 [C] 3.52 a:596 [G] 42.65
h:56 [LYS] a:661 [U] 3.1 42.65
h:57 [GLN] a:597 [U] 2.53 a:658 [A] sugar:SC 46.85
h:57 [GLN] a:598 [U] 3.93 a:657 [A] 46.85
h:57 [GLN] a:661 [U] 4.94 46.85
h:82 [LYS] a:886 [C] 3.99 a:831 [G] 79.71
h:82 [LYS] a:887 [U] 3.33 a:830 [A] 79.71
h:83 [PRO] a:594 [C] 4.1 a:763 [G] 89.76
h:83 [PRO] a:595 [G] 3.21 89.76
h:83 [PRO] a:887 [U] 3.34 a:830 [A] 89.76
h:83 [PRO] a:888 [C] 4.85 a:829 [G] 89.76
h:86 [ARG] a:651 [C] 2.43 a:605 [G] sugar:SC 95.43
h:86 [ARG] a:652 [U] 3.27 a:604 [A] 95.43
h:88 [TYR] a:605 [G] 3.88 a:651 [C] base:SC 93.33
h:88 [TYR] a:606 [U] 3.09 a:648 [A] 93.33
h:88 [TYR] a:607 [C] 3.43 a:647 [G] 93.33
h:89 [ALA] a:607 [C] 3.33 a:647 [G] 29.07
h:89 [ALA] a:608 [U] 4.22 a:646 [G] 29.07
h:90 [LYS] a:607 [C] 4.59 a:647 [G] 59.23
h:90 [LYS] a:608 [U] 2.84 a:646 [G] 59.23
h:91 [ALA] a:607 [C] 4.54 a:647 [G] 0.1
h:91 [ALA] a:608 [U] 2.82 a:646 [G] 0.1
h:92 [SER] a:608 [U] 4.64 a:646 [G] 48.24
h:99 [ASN] a:5 [A] 4.36 58.05
h:107 [SER] a:606 [U] 4.89 a:648 [A] 95.84
h:107 [SER] a:650 [A] 3.5 a:649 [A] 95.84
h:108 [THR] a:606 [U] 3.66 a:648 [A] base:SC 98.97
h:108 [THR] a:607 [C] 4.73 a:647 [G] 98.97
h:108 [THR] a:648 [A] 3.58 a:606 [U] 98.97
h:108 [THR] a:650 [A] 3.64 a:649 [A] 98.97
h:109 [SER] a:648 [A] 2.46 a:606 [U] sugar:BB 83.77
h:109 [SER] a:649 [A] 3.3 a:650 [A] 83.77
h:109 [SER] a:650 [A] 3.67 a:649 [A] 83.77
h:110 [GLU] a:648 [A] 4.18 a:606 [U] 60.47
h:112 [VAL] a:650 [A] 4.31 a:649 [A] 77.0
h:122 [ASN] a:608 [U] 2.77 a:646 [G] sugar:BB 47.67
h:122 [ASN] a:609 [G] 2.73 a:645 [U] 47.67
h:123 [VAL] a:607 [C] 3.3 a:647 [G] 69.19
h:123 [VAL] a:608 [U] 3.94 a:646 [G] 69.19
h:124 [GLY] a:607 [C] 2.89 a:647 [G] sugar:BB 97.56
h:124 [GLY] a:608 [U] 3.56 a:646 [G] 97.56
h:125 [GLY] a:606 [U] 4.35 a:648 [A] 98.34
h:125 [GLY] a:607 [C] 3.47 a:647 [G] 98.34
h:126 [GLU] a:605 [G] 4.74 a:651 [C] 94.01
h:126 [GLU] a:606 [U] 4.34 a:648 [A] 94.01
h:126 [GLU] a:650 [A] 3.69 a:649 [A] 94.01
h:126 [GLU] a:651 [C] 3.71 a:605 [G] 94.01

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group86 6S0X_h_a h: 30s ribosomal protein s8, Staphylococcus aureus (natural) a: 16s ribosomal RNA, Staphylococcus aureus (natural) W8U8T8 Ribosomal protein S8, N-terminal domain & Ribosomal protein S8, C-terminal domain Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0X_h_a 7O7Y_Av_A2 0.64 0.9 3.15 0.21 Ribosomal protein S8, N-terminal domain & Ribosomal protein S8, C-terminal domain compare
6S0X_h_a 7K00_H_A 0.72 0.96 2.61 0.53 Ribosomal protein S8, N-terminal domain & Ribosomal protein S8, C-terminal domain Bacterial small subunit ribosomal RNA compare
6S0X_h_a 7RYG_h_a 0.72 0.97 2.59 0.5 Ribosomal protein S8, N-terminal domain & Ribosomal protein S8, C-terminal domain Bacterial small subunit ribosomal RNA compare
4Y4O_1h_1a 6S0X_h_a 0.71 0.95 2.68 0.61 Ribosomal protein S8, N-terminal domain & Ribosomal protein S8, C-terminal domain Bacterial small subunit ribosomal RNA compare