Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7O7Y_Av
|
7O7Y_A2
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| Av:2 [VAL] | A2:684 [OMG] | 4.93 | 49.41 | |||
| Av:2 [VAL] | A2:923 [A] | 3.66 | A2:1023 [U] | 49.41 | ||
| Av:2 [VAL] | A2:1024 [A] | 3.36 | A2:683 [U] | 49.41 | ||
| Av:2 [VAL] | A2:1025 [A] | 3.63 | A2:682 [PSU] | 49.41 | ||
| Av:2 [VAL] | A2:1092 [C] | 2.39 | A2:1159 [G] | sugar:BB | 49.41 | |
| Av:2 [VAL] | A2:1093 [G] | 3.42 | 49.41 | |||
| Av:2 [VAL] | A2:1159 [G] | 3.06 | A2:1092 [C] | base:BB | 49.41 | |
| Av:3 [ARG] | A2:684 [OMG] | 4.0 | sugar:BB | 34.47 | ||
| Av:3 [ARG] | A2:685 [G] | 3.65 | 34.47 | |||
| Av:3 [ARG] | A2:921 [A] | 4.45 | A2:1022 [U] | 34.47 | ||
| Av:3 [ARG] | A2:923 [A] | 3.02 | A2:1023 [U] | 34.47 | ||
| Av:3 [ARG] | A2:1093 [G] | 3.74 | 34.47 | |||
| Av:3 [ARG] | A2:1094 [A] | 3.32 | A2:1153 [U] | 34.47 | ||
| Av:4 [MET] | A2:683 [U] | 3.31 | A2:1024 [A] | 63.14 | ||
| Av:4 [MET] | A2:684 [OMG] | 3.24 | 63.14 | |||
| Av:4 [MET] | A2:685 [G] | 4.23 | 63.14 | |||
| Av:4 [MET] | A2:1024 [A] | 4.68 | A2:683 [U] | 63.14 | ||
| Av:4 [MET] | A2:1025 [A] | 3.95 | A2:682 [PSU] | 63.14 | ||
| Av:4 [MET] | A2:1159 [G] | 3.87 | A2:1092 [C] | 63.14 | ||
| Av:4 [MET] | A2:1160 [G] | 3.39 | A2:1091 [C] | 63.14 | ||
| Av:5 [ASN] | A2:1159 [G] | 3.59 | A2:1092 [C] | 87.64 | ||
| Av:6 [VAL] | A2:685 [G] | 3.38 | 24.24 | |||
| Av:6 [VAL] | A2:686 [A] | 3.43 | 24.24 | |||
| Av:8 [ALA] | A2:1159 [G] | 3.53 | A2:1092 [C] | 78.37 | ||
| Av:9 [ASP] | A2:1093 [G] | 4.2 | 79.61 | |||
| Av:9 [ASP] | A2:1094 [A] | 3.43 | A2:1153 [U] | 79.61 | ||
| Av:12 [LYS] | A2:1094 [A] | 4.15 | A2:1153 [U] | 66.39 | ||
| Av:12 [LYS] | A2:1095 [C] | 4.54 | A2:1152 [G] | 66.39 | ||
| Av:12 [LYS] | A2:1153 [U] | 3.6 | A2:1094 [A] | 66.39 | ||
| Av:12 [LYS] | A2:1154 [C] | 3.49 | 66.39 | |||
| Av:12 [LYS] | A2:1159 [G] | 4.69 | A2:1092 [C] | 66.39 | ||
| Av:13 [SER] | A2:1094 [A] | 4.12 | A2:1153 [U] | 41.34 | ||
| Av:13 [SER] | A2:1095 [C] | 3.44 | A2:1152 [G] | 41.34 | ||
| Av:15 [ASN] | A2:1153 [U] | 4.07 | A2:1094 [A] | 62.29 | ||
| Av:15 [ASN] | A2:1154 [C] | 3.57 | 62.29 | |||
| Av:16 [ASN] | A2:1095 [C] | 2.81 | A2:1152 [G] | base:SC, sugar:SC | 89.37 | |
| Av:16 [ASN] | A2:1096 [U] | 3.92 | A2:1150 [A] | sugar:SC | 89.37 | |
| Av:16 [ASN] | A2:1152 [G] | 3.82 | A2:1095 [C] | 89.37 | ||
| Av:16 [ASN] | A2:1153 [U] | 2.5 | A2:1094 [A] | base:SC, sugar:SC | 89.37 | |
| Av:19 [LYS] | A2:1153 [U] | 2.81 | A2:1094 [A] | sugar:SC | 12.11 | |
| Av:19 [LYS] | A2:1154 [C] | 3.87 | 12.11 | |||
| Av:20 [ARG] | A2:1096 [U] | 3.22 | A2:1150 [A] | 49.13 | ||
| Av:20 [ARG] | A2:1097 [G] | 3.06 | A2:1137 [U] | 49.13 | ||
| Av:20 [ARG] | A2:1140 [C] | 3.46 | 49.13 | |||
| Av:22 [LYS] | A2:1096 [U] | 4.4 | A2:1150 [A] | 64.07 | ||
| Av:22 [LYS] | A2:1097 [G] | 3.34 | A2:1137 [U] | 64.07 | ||
| Av:26 [LEU] | A2:922 [G] | 4.26 | 4.63 | |||
| Av:28 [ARG] | A2:922 [G] | 3.2 | base/AA stacks | 5.28 | ||
| Av:28 [ARG] | A2:923 [A] | 2.78 | A2:1023 [U] | 5.28 | ||
| Av:28 [ARG] | A2:1094 [A] | 4.43 | A2:1153 [U] | 5.28 | ||
| Av:28 [ARG] | A2:1095 [C] | 4.1 | A2:1152 [G] | 5.28 | ||
| Av:29 [PRO] | A2:685 [G] | 4.24 | 64.72 | |||
| Av:30 [CYS] | A2:686 [A] | 3.5 | 9.28 | |||
| Av:30 [CYS] | A2:687 [PSU] | 4.95 | 9.28 | |||
| Av:31 [SER] | A2:686 [A] | 3.58 | 98.75 | |||
| Av:31 [SER] | A2:687 [PSU] | 3.28 | 98.75 | |||
| Av:32 [LYS] | A2:686 [A] | 4.46 | 65.0 | |||
| Av:32 [LYS] | A2:687 [PSU] | 2.57 | 65.0 | |||
| Av:32 [LYS] | A2:688 [C] | 3.04 | 65.0 | |||
| Av:32 [LYS] | A2:864 [PSU] | 3.57 | A2:803 [A] | 65.0 | ||
| Av:33 [VAL] | A2:687 [PSU] | 4.75 | 39.56 | |||
| Av:33 [VAL] | A2:864 [PSU] | 3.74 | A2:803 [A] | 39.56 | ||
| Av:36 [ARG] | A2:690 [U] | 3.59 | 15.83 | |||
| Av:36 [ARG] | A2:691 [G] | 3.44 | A2:737 [C] | 15.83 | ||
| Av:55 [ASP] | A2:922 [G] | 4.47 | 48.0 | |||
| Av:56 [HIS] | A2:919 [U] | 2.82 | sugar:BB | 23.19 | ||
| Av:56 [HIS] | A2:920 [A] | 4.11 | 23.19 | |||
| Av:57 [ARG] | A2:686 [A] | 4.35 | 56.08 | |||
| Av:57 [ARG] | A2:919 [U] | 4.35 | 56.08 | |||
| Av:57 [ARG] | A2:920 [A] | 4.24 | 56.08 | |||
| Av:57 [ARG] | A2:921 [A] | 2.56 | A2:1022 [U] | 56.08 | ||
| Av:57 [ARG] | A2:922 [G] | 3.79 | 56.08 | |||
| Av:58 [ALA] | A2:686 [A] | 3.29 | 36.32 | |||
| Av:60 [LYS] | A2:922 [G] | 2.97 | base:SC | 3.63 | ||
| Av:70 [ASN] | A2:1156 [U] | 3.43 | 80.6 | |||
| Av:71 [LYS] | A2:1154 [C] | 2.73 | 43.21 | |||
| Av:71 [LYS] | A2:1155 [U] | 4.95 | 43.21 | |||
| Av:71 [LYS] | A2:1156 [U] | 2.96 | 43.21 | |||
| Av:71 [LYS] | A2:1157 [U] | 2.66 | 43.21 | |||
| Av:74 [VAL] | A2:1158 [G] | 2.8 | sugar:BB | 69.75 | ||
| Av:74 [VAL] | A2:1159 [G] | 3.97 | A2:1092 [C] | 69.75 | ||
| Av:75 [ILE] | A2:1158 [G] | 3.31 | 93.5 | |||
| Av:76 [SER] | A2:1158 [G] | 2.87 | sugar:BB | 68.2 | ||
| Av:76 [SER] | A2:1159 [G] | 2.99 | A2:1092 [C] | 68.2 | ||
| Av:76 [SER] | A2:1160 [G] | 2.63 | A2:1091 [C] | 68.2 | ||
| Av:77 [PRO] | A2:1158 [G] | 4.62 | 81.84 | |||
| Av:77 [PRO] | A2:1160 [G] | 4.03 | A2:1091 [C] | 81.84 | ||
| Av:78 [ARG] | A2:864 [PSU] | 3.08 | A2:803 [A] | sugar:SC | 90.42 | |
| Av:78 [ARG] | A2:865 [A] | 4.2 | A2:802 [PSU] | 90.42 | ||
| Av:79 [PHE] | A2:1158 [G] | 3.63 | 51.45 | |||
| Av:80 [ASP] | A2:804 [C] | 3.3 | A2:861 [G] | 62.67 | ||
| Av:80 [ASP] | A2:805 [U] | 3.62 | A2:860 [G] | 62.67 | ||
| Av:81 [VAL] | A2:805 [U] | 4.06 | A2:860 [G] | 64.92 | ||
| Av:82 [GLN] | A2:805 [U] | 3.32 | A2:860 [G] | 44.58 | ||
| Av:82 [GLN] | A2:806 [U] | 3.26 | A2:859 [A] | 44.58 | ||
| Av:82 [GLN] | A2:854 [C] | 4.97 | 44.58 | |||
| Av:83 [LEU] | A2:805 [U] | 4.53 | A2:860 [G] | 0.73 | ||
| Av:83 [LEU] | A2:806 [U] | 2.95 | A2:859 [A] | 0.73 | ||
| Av:84 [LYS] | A2:806 [U] | 4.64 | A2:859 [A] | 35.31 | ||
| Av:84 [LYS] | A2:852 [C] | 3.54 | 35.31 | |||
| Av:88 [LYS] | A2:420 [G] | 3.72 | A2:663 [G] | 31.07 | ||
| Av:88 [LYS] | A2:421 [G] | 2.4 | A2:662 [U] | 31.07 | ||
| Av:89 [TRP] | A2:1158 [G] | 3.41 | 61.42 | |||
| Av:92 [ASN] | A2:420 [G] | 4.38 | A2:663 [G] | 73.86 | ||
| Av:92 [ASN] | A2:662 [U] | 3.74 | A2:421 [G] | 73.86 | ||
| Av:92 [ASN] | A2:1157 [U] | 4.99 | 73.86 | |||
| Av:93 [LEU] | A2:1157 [U] | 4.98 | 36.83 | |||
| Av:93 [LEU] | A2:1158 [G] | 3.64 | 36.83 | |||
| Av:105 [THR] | A2:863 [A] | 2.87 | base:SC, sugar:SC | 91.6 | ||
| Av:105 [THR] | A2:864 [PSU] | 2.98 | A2:803 [A] | sugar:SC | 91.6 | |
| Av:106 [THR] | A2:863 [A] | 3.11 | 99.0 | |||
| Av:107 [SER] | A2:861 [G] | 2.94 | A2:804 [C] | base:SC, sugar:SC | 79.64 | |
| Av:107 [SER] | A2:862 [A] | 3.17 | 79.64 | |||
| Av:107 [SER] | A2:863 [A] | 3.58 | 79.64 | |||
| Av:108 [ALA] | A2:861 [G] | 4.07 | A2:804 [C] | 46.63 | ||
| Av:109 [GLY] | A2:863 [A] | 4.26 | 98.05 | |||
| Av:110 [ILE] | A2:863 [A] | 3.6 | 71.65 | |||
| Av:115 [GLU] | A2:731 [C] | 3.29 | A2:697 [G] | 76.6 | ||
| Av:118 [ARG] | A2:730 [C] | 4.26 | A2:698 [G] | 46.37 | ||
| Av:118 [ARG] | A2:731 [C] | 3.67 | A2:697 [G] | 46.37 | ||
| Av:118 [ARG] | A2:732 [G] | 4.69 | A2:696 [C] | 46.37 | ||
| Av:119 [LYS] | A2:731 [C] | 3.3 | A2:697 [G] | 49.68 | ||
| Av:119 [LYS] | A2:732 [G] | 3.28 | A2:696 [C] | 49.68 | ||
| Av:120 [HIS] | A2:806 [U] | 2.98 | A2:859 [A] | 44.94 | ||
| Av:120 [HIS] | A2:807 [U] | 2.93 | A2:858 [U] | 44.94 | ||
| Av:121 [THR] | A2:805 [U] | 3.67 | A2:860 [G] | sugar:SC | 52.2 | |
| Av:121 [THR] | A2:806 [U] | 4.56 | A2:859 [A] | 52.2 | ||
| Av:122 [GLY] | A2:805 [U] | 2.96 | A2:860 [G] | sugar:BB | 98.3 | |
| Av:122 [GLY] | A2:806 [U] | 4.09 | A2:859 [A] | 98.3 | ||
| Av:123 [GLY] | A2:804 [C] | 4.55 | A2:861 [G] | 98.55 | ||
| Av:123 [GLY] | A2:805 [U] | 3.76 | A2:860 [G] | 98.55 | ||
| Av:124 [LYS] | A2:803 [A] | 4.1 | A2:864 [PSU] | 65.78 | ||
| Av:124 [LYS] | A2:804 [C] | 3.77 | A2:861 [G] | 65.78 | ||
| Av:124 [LYS] | A2:863 [A] | 4.87 | 65.78 | |||
| Av:124 [LYS] | A2:864 [PSU] | 3.2 | A2:803 [A] | 65.78 | ||
| Av:128 [PHE] | A2:1156 [U] | 4.82 | 46.63 | |||
| Av:128 [PHE] | A2:1157 [U] | 3.4 | 46.63 | |||
| Av:130 [PHE] | A2:1156 [U] | 3.27 | 87.27 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group86 | 7O7Y_Av_A2 | Av: Ribosomal protein s15a, Oryctolagus cuniculus (natural) A2: 18s rRNA, Oryctolagus cuniculus (natural) | G1TG89 | Ribosomal protein S8, N-terminal domain & Ribosomal protein S8, C-terminal domain | Eukaryotic small subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 3