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All interfaces > All interologs > Interface groups > group87 > 4Y4O_1j_1a

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Contacts -

4Y4O_1j
4Y4O_1a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1j:5 [ARG] 1a:1125 [U] 2.99 80.02
1j:5 [ARG] 1a:1126 [U] 3.1 80.02
1j:7 [LYS] 1a:1126 [U] 3.45 44.41
1j:7 [LYS] 1a:1279 [A] 3.16 44.41
1j:7 [LYS] 1a:1280 [A] 2.96 44.41
1j:7 [LYS] 1a:1281 [U] 4.59 44.41
1j:9 [ARG] 1a:1279 [A] 3.52 48.18
1j:13 [HIS] 1a:1152 [A] 2.88 1a:1121 [U] 19.19
1j:13 [HIS] 1a:1153 [C] 3.15 1a:1120 [G] 19.19
1j:17 [ASP] 1a:1152 [A] 3.0 1a:1121 [U] sugar:SC 64.12
1j:34 [VAL] 1a:1124 [G] 4.5 1a:1149 [C] 49.88
1j:35 [SER] 1a:1123 [A] 4.37 1a:1150 [U] 47.34
1j:35 [SER] 1a:1124 [G] 3.04 1a:1149 [C] 47.34
1j:35 [SER] 1a:1125 [U] 2.89 47.34
1j:36 [GLY] 1a:1123 [A] 2.73 1a:1150 [U] 88.71
1j:36 [GLY] 1a:1124 [G] 2.62 1a:1149 [C] 88.71
1j:37 [PRO] 1a:1123 [A] 2.74 1a:1150 [U] 78.99
1j:38 [ILE] 1a:1123 [A] 3.49 1a:1150 [U] 78.47
1j:38 [ILE] 1a:1124 [G] 3.62 1a:1149 [C] 78.47
1j:38 [ILE] 1a:1125 [U] 3.41 78.47
1j:38 [ILE] 1a:1280 [A] 4.55 78.47
1j:39 [PRO] 1a:1123 [A] 3.33 1a:1150 [U] 62.74
1j:39 [PRO] 1a:1150 [U] 2.82 1a:1123 [A] sugar:BB 62.74
1j:39 [PRO] 1a:1151 [A] 3.19 1a:1122 [U] 62.74
1j:40 [LEU] 1a:1125 [U] 4.07 92.22
1j:40 [LEU] 1a:1126 [U] 3.32 92.22
1j:40 [LEU] 1a:1150 [U] 3.69 1a:1123 [A] 92.22
1j:40 [LEU] 1a:1151 [A] 3.71 1a:1122 [U] 92.22
1j:40 [LEU] 1a:1280 [A] 3.53 92.22
1j:41 [PRO] 1a:1150 [U] 3.09 1a:1123 [A] 99.0
1j:41 [PRO] 1a:1151 [A] 3.37 1a:1122 [U] 99.0
1j:41 [PRO] 1a:1280 [A] 3.15 99.0
1j:42 [THR] 1a:1150 [U] 4.39 1a:1123 [A] 89.62
1j:42 [THR] 1a:1151 [A] 2.93 1a:1122 [U] 89.62
1j:42 [THR] 1a:1152 [A] 3.89 1a:1121 [U] 89.62
1j:42 [THR] 1a:1253 [G] 4.86 1a:1284 [C] 89.62
1j:43 [ARG] 1a:1254 [C] 3.92 1a:1283 [G] base/AA stacks 54.37
1j:43 [ARG] 1a:1255 [G] 2.86 1a:1282 [C] base:SC, base:SC 54.37
1j:43 [ARG] 1a:1279 [A] 3.42 54.37
1j:43 [ARG] 1a:1280 [A] 4.59 54.37
1j:44 [VAL] 1a:1253 [G] 3.26 1a:1284 [C] 37.05
1j:44 [VAL] 1a:1254 [C] 3.09 1a:1283 [G] 37.05
1j:45 [ARG] 1a:1254 [C] 3.41 1a:1283 [G] 59.98
1j:45 [ARG] 1a:1255 [G] 2.68 1a:1282 [C] 59.98
1j:46 [ARG] 1a:1252 [A] 4.63 1a:1285 [A] 61.0
1j:46 [ARG] 1a:1253 [G] 3.05 1a:1284 [C] 61.0
1j:46 [ARG] 1a:1254 [C] 4.69 1a:1283 [G] 61.0
1j:48 [THR] 1a:975 [A] 3.57 79.61
1j:48 [THR] 1a:1367 [C] 3.34 1a:1355 [G] sugar:SC 79.61
1j:50 [ILE] 1a:973 [G] 4.08 1a:962 [C] 79.47
1j:51 [ARG] 1a:1059 [C] 3.08 1a:1198 [G] sugar:BB 81.89
1j:51 [ARG] 1a:1060 [C] 3.59 1a:1197 [G] 81.89
1j:51 [ARG] 1a:1061 [G] 3.78 1a:1195 [C] 81.89
1j:51 [ARG] 1a:1188 [A] 4.1 81.89
1j:51 [ARG] 1a:1189 [C] 2.35 81.89
1j:51 [ARG] 1a:1190 [G] 4.91 81.89
1j:52 [GLY] 1a:1059 [C] 4.07 1a:1198 [G] 98.27
1j:52 [GLY] 1a:1060 [C] 3.44 1a:1197 [G] 98.27
1j:53 [PRO] 1a:973 [G] 3.52 1a:962 [C] sugar:BB 91.44
1j:53 [PRO] 1a:1058 [G] 3.64 1a:1199 [U] 91.44
1j:53 [PRO] 1a:1059 [C] 3.3 1a:1198 [G] 91.44
1j:53 [PRO] 1a:1060 [C] 4.32 1a:1197 [G] 91.44
1j:53 [PRO] 1a:1198 [G] 4.12 1a:1059 [C] 91.44
1j:53 [PRO] 1a:1199 [U] 4.59 1a:1058 [G] 91.44
1j:53 [PRO] 1a:1202 [G] 3.42 91.44
1j:54 [PHE] 1a:963 [G] 3.22 1a:972 [C] 91.11
1j:54 [PHE] 1a:964 [A] 3.64 91.11
1j:54 [PHE] 1a:973 [G] 3.3 1a:962 [C] 91.11
1j:54 [PHE] 1a:1198 [G] 3.44 1a:1059 [C] 91.11
1j:54 [PHE] 1a:1199 [U] 3.5 1a:1058 [G] 91.11
1j:54 [PHE] 1a:1202 [G] 4.55 91.11
1j:55 [LYS] 1a:963 [G] 4.77 1a:972 [C] 82.69
1j:55 [LYS] 1a:964 [A] 3.24 sugar:SC 82.69
1j:55 [LYS] 1a:965 [A] 3.92 82.69
1j:55 [LYS] 1a:969 [A] 2.81 82.69
1j:55 [LYS] 1a:972 [C] 3.46 1a:963 [G] 82.69
1j:55 [LYS] 1a:973 [G] 3.24 1a:962 [C] sugar:BB 82.69
1j:55 [LYS] 1a:1198 [G] 3.12 1a:1059 [C] 82.69
1j:56 [HIS] 1a:969 [A] 4.16 79.14
1j:56 [HIS] 1a:972 [C] 3.75 1a:963 [G] 79.14
1j:56 [HIS] 1a:1060 [C] 2.86 1a:1197 [G] base:SC 79.14
1j:56 [HIS] 1a:1061 [G] 3.05 1a:1195 [C] 79.14
1j:56 [HIS] 1a:1197 [G] 3.44 1a:1060 [C] 79.14
1j:56 [HIS] 1a:1198 [G] 4.45 1a:1059 [C] 79.14
1j:57 [LYS] 1a:971 [G] 4.56 87.67
1j:57 [LYS] 1a:972 [C] 3.2 1a:963 [G] sugar:BB 87.67
1j:57 [LYS] 1a:973 [G] 2.49 1a:962 [C] 87.67
1j:57 [LYS] 1a:975 [A] 4.02 87.67
1j:57 [LYS] 1a:1366 [C] 4.22 1a:1356 [G] 87.67
1j:59 [SER] 1a:1060 [C] 3.81 1a:1197 [G] 90.17
1j:59 [SER] 1a:1061 [G] 2.59 1a:1195 [C] 90.17
1j:60 [ARG] 1a:975 [A] 3.08 base:SC 74.25
1j:60 [ARG] 1a:1366 [C] 2.93 1a:1356 [G] sugar:SC, sugar:SC 74.25
1j:60 [ARG] 1a:1367 [C] 3.19 1a:1355 [G] 74.25
1j:61 [GLU] 1a:1189 [C] 4.14 79.36
1j:62 [HIS] 1a:1367 [C] 3.37 1a:1355 [G] 79.14
1j:62 [HIS] 1a:1368 [G] 2.84 1a:1354 [C] 79.14
1j:66 [ARG] 1a:1152 [A] 3.99 1a:1121 [U] 64.69
1j:68 [HIS] 1a:1151 [A] 4.31 1a:1122 [U] 85.7
1j:68 [HIS] 1a:1152 [A] 2.51 1a:1121 [U] 85.7
1j:70 [ARG] 1a:1151 [A] 3.32 1a:1122 [U] 98.39
1j:70 [ARG] 1a:1152 [A] 3.41 1a:1121 [U] 98.39
1j:71 [LEU] 1a:1125 [U] 3.47 59.77
1j:71 [LEU] 1a:1126 [U] 3.38 59.77
1j:73 [ASP] 1a:1125 [U] 3.71 48.04
1j:97 [GLU] 1a:1278 [U] 4.08 47.78

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group87 4Y4O_1j_1a 1j: 30s ribosomal protein s10, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1a: 16s ribosomal RNA, Thermus thermophilus hb8 (natural) Q5SHN7 Ribosomal protein S10 Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1j_1a 7RYG_j_a 0.34 0.91 4.08 0.11 Ribosomal protein S10 Bacterial small subunit ribosomal RNA compare
4Y4O_1j_1a 7O7Y_At_A2 0.55 0.93 1.91 0.35 Ribosomal protein S10 compare
4Y4O_1j_1a 6S0X_j_a 0.67 0.95 2.77 0.53 Ribosomal protein S10 Bacterial small subunit ribosomal RNA compare
4Y4O_1j_1a 7K00_J_A 0.92 0.98 1.01 0.59 Ribosomal protein S10 Bacterial small subunit ribosomal RNA compare