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All interfaces > All interologs > Interface groups > group87 > 6S0X_j_a

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6S0X_j
6S0X_a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
j:7 [ARG] a:1136 [U] 3.24 77.16
j:7 [ARG] a:1137 [U] 2.57 base:SC 77.16
j:9 [ARG] a:1137 [U] 4.73 45.4
j:9 [ARG] a:1289 [A] 3.89 45.4
j:9 [ARG] a:1290 [A] 2.82 45.4
j:15 [HIS] a:1162 [A] 4.62 a:1133 [U] 18.23
j:15 [HIS] a:1163 [G] 3.82 a:1132 [U] 18.23
j:19 [ASP] a:1163 [G] 4.92 a:1132 [U] 55.69
j:37 [SER] a:1134 [A] 4.07 a:1161 [A] 46.41
j:37 [SER] a:1135 [G] 4.02 a:1160 [U] 46.41
j:37 [SER] a:1136 [U] 4.98 46.41
j:38 [GLY] a:1134 [A] 3.1 a:1161 [A] sugar:BB 90.16
j:38 [GLY] a:1135 [G] 4.91 a:1160 [U] 90.16
j:39 [PRO] a:1133 [U] 4.37 a:1162 [A] 82.86
j:39 [PRO] a:1134 [A] 4.28 a:1161 [A] 82.86
j:39 [PRO] a:1162 [A] 4.68 a:1133 [U] 82.86
j:40 [ILE] a:1134 [A] 3.37 a:1161 [A] 82.48
j:40 [ILE] a:1135 [G] 4.42 a:1160 [U] 82.48
j:40 [ILE] a:1136 [U] 3.33 82.48
j:40 [ILE] a:1161 [A] 4.43 a:1134 [A] 82.48
j:41 [PRO] a:1161 [A] 3.41 a:1134 [A] sugar:BB 70.88
j:41 [PRO] a:1162 [A] 3.31 a:1133 [U] 70.88
j:42 [LEU] a:1161 [A] 3.49 a:1134 [A] 89.79
j:42 [LEU] a:1162 [A] 4.14 a:1133 [U] 89.79
j:42 [LEU] a:1290 [A] 3.36 89.79
j:43 [PRO] a:1161 [A] 3.3 a:1134 [A] 99.0
j:43 [PRO] a:1162 [A] 4.78 a:1133 [U] 99.0
j:43 [PRO] a:1290 [A] 4.44 99.0
j:44 [THR] a:1162 [A] 4.59 a:1133 [U] 83.18
j:45 [GLU] a:1264 [G] 2.88 a:1293 [C] 53.81
j:48 [VAL] a:1377 [U] 4.95 a:1365 [A] 53.33
j:48 [VAL] a:1378 [A] 4.67 a:1364 [U] 53.33
j:50 [THR] a:984 [A] 3.55 base:BB 82.55
j:50 [THR] a:1377 [U] 4.18 a:1365 [A] 82.55
j:52 [ILE] a:982 [G] 4.58 a:971 [C] 68.87
j:52 [ILE] a:983 [A] 4.09 68.87
j:53 [ARG] a:1070 [U] 4.69 a:1208 [A] 76.3
j:53 [ARG] a:1071 [U] 3.56 a:1207 [A] 76.3
j:53 [ARG] a:1072 [G] 3.38 a:1205 [C] 76.3
j:54 [ALA] a:1070 [U] 4.92 a:1208 [A] 98.27
j:54 [ALA] a:1071 [U] 3.36 a:1207 [A] 98.27
j:55 [VAL] a:1069 [G] 4.51 a:1209 [U] 86.08
j:55 [VAL] a:1070 [U] 3.84 a:1208 [A] 86.08
j:55 [VAL] a:1071 [U] 4.92 a:1207 [A] 86.08
j:55 [VAL] a:1208 [A] 3.74 a:1070 [U] 86.08
j:55 [VAL] a:1209 [U] 4.93 a:1069 [G] 86.08
j:55 [VAL] a:1212 [U] 3.59 86.08
j:56 [HIS] a:972 [G] 4.84 a:981 [C] 90.39
j:56 [HIS] a:982 [G] 2.42 a:971 [C] sugar:BB 90.39
j:56 [HIS] a:1208 [A] 4.88 a:1070 [U] 90.39
j:56 [HIS] a:1209 [U] 3.71 a:1069 [G] 90.39
j:56 [HIS] a:1211 [A] 3.54 a:970 [U] 90.39
j:56 [HIS] a:1212 [U] 3.11 90.39
j:57 [LYS] a:973 [A] 3.04 sugar:SC 81.02
j:57 [LYS] a:974 [A] 3.81 81.02
j:57 [LYS] a:978 [A] 3.5 81.02
j:57 [LYS] a:981 [C] 3.93 a:972 [G] sugar:BB 81.02
j:57 [LYS] a:982 [G] 4.21 a:971 [C] 81.02
j:57 [LYS] a:1207 [A] 4.95 a:1071 [U] 81.02
j:57 [LYS] a:1208 [A] 3.36 a:1070 [U] sugar:SC 81.02
j:58 [TYR] a:977 [A] 4.07 74.15
j:58 [TYR] a:978 [A] 3.95 74.15
j:58 [TYR] a:1071 [U] 3.96 a:1207 [A] 74.15
j:58 [TYR] a:1072 [G] 3.78 a:1205 [C] base/AA stacks 74.15
j:58 [TYR] a:1207 [A] 2.56 a:1071 [U] base:SC 74.15
j:58 [TYR] a:1208 [A] 3.28 a:1070 [U] 74.15
j:59 [LYS] a:978 [A] 3.78 93.51
j:59 [LYS] a:981 [C] 3.34 a:972 [G] 93.51
j:59 [LYS] a:982 [G] 3.51 a:971 [C] 93.51
j:60 [ASP] a:977 [A] 4.77 50.43
j:60 [ASP] a:979 [C] 4.67 a:960 [G] 50.43
j:60 [ASP] a:1072 [G] 4.01 a:1205 [C] 50.43
j:61 [SER] a:1071 [U] 2.68 a:1207 [A] 91.07
j:61 [SER] a:1072 [G] 3.16 a:1205 [C] 91.07
j:62 [ARG] a:1376 [C] 3.08 a:1366 [G] 80.65
j:62 [ARG] a:1377 [U] 2.48 a:1365 [A] 80.65
j:68 [ARG] a:1125 [C] 4.17 a:1196 [G] 74.01
j:71 [LYS] a:1289 [A] 4.57 63.58
j:71 [LYS] a:1290 [A] 3.18 63.58
j:72 [ARG] a:1162 [A] 3.49 a:1133 [U] 96.22
j:73 [LEU] a:1136 [U] 3.75 57.41
j:73 [LEU] a:1137 [U] 3.42 57.41
j:73 [LEU] a:1290 [A] 4.8 57.41

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group87 6S0X_j_a j: 30s ribosomal protein s10, Staphylococcus aureus (natural) a: 16s ribosomal RNA, Staphylococcus aureus (natural) A0A0H2K0A0 Ribosomal protein S10 Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1j_1a 6S0X_j_a 0.67 0.95 2.77 0.53 Ribosomal protein S10 Bacterial small subunit ribosomal RNA compare
6S0X_j_a 7RYG_j_a 0.60 0.96 3.17 0.57 Ribosomal protein S10 Bacterial small subunit ribosomal RNA compare
6S0X_j_a 7O7Y_At_A2 0.54 0.9 2.76 0.33 Ribosomal protein S10 compare
6S0X_j_a 7K00_J_A 0.73 0.96 2.98 0.62 Ribosomal protein S10 Bacterial small subunit ribosomal RNA compare