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All interfaces > All interologs > Interface groups > group88 > 4Y4O_1s_1a

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Licorice
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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

4Y4O_1s
4Y4O_1a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1s:2 [PRO] 1a:1312 [G] 3.08 1a:1325 [C] 46.65
1s:2 [PRO] 1a:1313 [U] 2.73 1a:1324 [A] base:BB, base:BB 46.65
1s:2 [PRO] 1a:1314 [C] 3.24 1a:1323 [G] 46.65
1s:2 [PRO] 1a:1323 [G] 4.42 1a:1314 [C] 46.65
1s:2 [PRO] 1a:1324 [A] 4.33 1a:1313 [U] 46.65
1s:3 [ARG] 1a:1313 [U] 4.18 1a:1324 [A] 95.04
1s:3 [ARG] 1a:1314 [C] 4.04 1a:1323 [G] 95.04
1s:3 [ARG] 1a:1315 [U] 4.9 1a:1319 [A] 95.04
1s:3 [ARG] 1a:1316 [G] 3.75 base:SC 95.04
1s:3 [ARG] 1a:1317 [C] 4.96 95.04
1s:3 [ARG] 1a:1318 [A] 2.81 95.04
1s:3 [ARG] 1a:1319 [A] 3.4 1a:1315 [U] 95.04
1s:4 [SER] 1a:1313 [U] 3.7 1a:1324 [A] 81.6
1s:4 [SER] 1a:1314 [C] 2.83 1a:1323 [G] 81.6
1s:4 [SER] 1a:1315 [U] 4.83 1a:1319 [A] 81.6
1s:4 [SER] 1a:1316 [G] 4.84 81.6
1s:5 [LEU] 1a:1312 [G] 4.06 1a:1325 [C] 35.02
1s:5 [LEU] 1a:1313 [U] 2.81 1a:1324 [A] 35.02
1s:5 [LEU] 1a:1314 [C] 4.86 1a:1323 [G] 35.02
1s:6 [LYS] 1a:1271 [G] 4.48 1a:1264 [C] 40.67
1s:6 [LYS] 1a:1272 [G] 4.88 1a:1263 [C] 40.67
1s:6 [LYS] 1a:1313 [U] 3.95 1a:1324 [A] 40.67
1s:6 [LYS] 1a:1314 [C] 3.2 1a:1323 [G] 40.67
1s:6 [LYS] 1a:1315 [U] 4.92 1a:1319 [A] 40.67
1s:7 [LYS] 1a:1316 [G] 3.15 base:SC 91.82
1s:7 [LYS] 1a:1317 [C] 4.68 91.82
1s:7 [LYS] 1a:1318 [A] 2.97 91.82
1s:10 [PHE] 1a:1317 [C] 3.72 43.63
1s:10 [PHE] 1a:1318 [A] 3.32 43.63
1s:10 [PHE] 1a:1319 [A] 4.36 1a:1315 [U] 43.63
1s:14 [HIS] 1a:1014 [A] 3.33 41.69
1s:14 [HIS] 1a:1015 [A] 4.39 41.69
1s:18 [LYS] 1a:1014 [A] 3.09 50.2
1s:32 [LYS] 1a:1014 [A] 4.45 58.19
1s:34 [TRP] 1a:987 [G] 4.83 1a:1218 [C] 54.97
1s:34 [TRP] 1a:1014 [A] 3.13 base/AA stacks 54.97
1s:34 [TRP] 1a:1219 [U] 3.42 1a:986 [A] 54.97
1s:34 [TRP] 1a:1220 [G] 3.49 1a:985 [C] 54.97
1s:36 [ARG] 1a:1220 [G] 3.15 1a:985 [C] 98.91
1s:36 [ARG] 1a:1221 [G] 3.69 1a:984 [C] 98.91
1s:36 [ARG] 1a:1320 [C] 2.89 base:SC, base:SC 98.91
1s:36 [ARG] 1a:1321 [C] 3.86 98.91
1s:37 [ARG] 1a:1220 [G] 4.27 1a:985 [C] 71.57
1s:37 [ARG] 1a:1317 [C] 2.71 base:SC, base:SC, base:SC 71.57
1s:37 [ARG] 1a:1318 [A] 3.12 71.57
1s:37 [ARG] 1a:1320 [C] 4.19 71.57
1s:52 [TYR] 1a:986 [A] 2.4 1a:1219 [U] base:SC 79.71
1s:52 [TYR] 1a:987 [G] 3.33 1a:1218 [C] sugar:SC 79.71
1s:52 [TYR] 1a:1220 [G] 3.48 1a:985 [C] 79.71
1s:53 [ASN] 1a:958 [A] 3.33 base:BB 88.54
1s:53 [ASN] 1a:1220 [G] 4.06 1a:985 [C] 88.54
1s:53 [ASN] 1a:1221 [G] 3.24 1a:984 [C] sugar:BB 88.54
1s:54 [GLY] 1a:958 [A] 3.19 97.8
1s:54 [GLY] 1a:985 [C] 4.45 1a:1220 [G] 97.8
1s:54 [GLY] 1a:986 [A] 3.12 1a:1219 [U] 97.8
1s:54 [GLY] 1a:1220 [G] 2.66 1a:985 [C] base:BB 97.8
1s:54 [GLY] 1a:1221 [G] 3.37 1a:984 [C] 97.8
1s:55 [LYS] 1a:958 [A] 3.33 sugar:SC 73.86
1s:55 [LYS] 1a:986 [A] 3.13 1a:1219 [U] sugar:BB 73.86
1s:55 [LYS] 1a:987 [G] 4.92 1a:1218 [C] 73.86
1s:55 [LYS] 1a:1220 [G] 4.7 1a:985 [C] 73.86
1s:70 [LYS] 1a:1318 [A] 4.62 83.27
1s:70 [LYS] 1a:1319 [A] 3.28 1a:1315 [U] 83.27
1s:70 [LYS] 1a:1320 [C] 3.16 83.27
1s:72 [GLY] 1a:1320 [C] 3.15 93.27
1s:73 [GLU] 1a:1320 [C] 3.24 91.96
1s:77 [THR] 1a:958 [A] 3.24 base:BB 99.0
1s:77 [THR] 1a:959 [A] 2.83 base:BB 99.0
1s:77 [THR] 1a:1221 [G] 3.11 1a:984 [C] 99.0
1s:77 [THR] 1a:1222 [G] 2.64 1a:982 [U] 99.0
1s:77 [THR] 1a:1321 [C] 3.39 sugar:SC 99.0
1s:78 [ARG] 1a:959 [A] 4.08 87.03
1s:78 [ARG] 1a:960 [U] 3.91 1a:956 [U] 87.03
1s:78 [ARG] 1a:1222 [G] 3.61 1a:982 [U] 87.03
1s:78 [ARG] 1a:1223 [C] 3.04 87.03
1s:78 [ARG] 1a:1224 [G] 3.19 87.03
1s:78 [ARG] 1a:1225 [A] 3.06 1a:955 [U] 87.03
1s:78 [ARG] 1a:1321 [C] 2.91 sugar:SC 87.03
1s:78 [ARG] 1a:1322 [C] 2.65 87.03
1s:79 [THR] 1a:956 [U] 4.01 1a:960 [U] 69.78
1s:79 [THR] 1a:957 [U] 3.17 69.78
1s:79 [THR] 1a:958 [A] 3.89 69.78
1s:79 [THR] 1a:959 [A] 4.87 69.78
1s:79 [THR] 1a:960 [U] 4.36 1a:956 [U] 69.78
1s:80 [TYR] 1a:956 [U] 3.69 1a:960 [U] 3.13
1s:80 [TYR] 1a:1225 [A] 4.94 1a:955 [U] 3.13
1s:80 [TYR] 1a:1226 [C] 3.31 1a:954 [G] 3.13
1s:80 [TYR] 1a:1227 [A] 2.38 3.13
1s:81 [ARG] 1a:957 [U] 4.27 47.57
1s:82 [GLY] 1a:956 [U] 4.29 1a:960 [U] 21.0
1s:83 [HIS] 1a:954 [G] 3.76 1a:1226 [C] 77.86
1s:83 [HIS] 1a:955 [U] 2.71 1a:1225 [A] base:SC 77.86
1s:83 [HIS] 1a:956 [U] 3.88 1a:960 [U] 77.86
1s:83 [HIS] 1a:1226 [C] 2.89 1a:954 [G] 77.86
1s:83 [HIS] 1a:1227 [A] 3.3 base/AA stacks 77.86
1s:84 [GLY] 1a:955 [U] 4.81 1a:1225 [A] 53.92
1s:84 [GLY] 1a:1227 [A] 4.44 53.92

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group88 4Y4O_1s_1a 1s: 30s ribosomal protein s19, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1a: 16s ribosomal RNA, Thermus thermophilus hb8 (natural) Q5SHP2 Ribosomal protein S19 Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1s_1a 7O7Y_Ao_A2 0.62 0.93 2.94 0.43 Ribosomal protein S19 compare
4Y4O_1s_1a 6S0X_s_a 0.33 0.94 6.37 0.11 Ribosomal protein S19 Bacterial small subunit ribosomal RNA compare
4Y4O_1s_1a 7K00_S_A 0.97 0.98 0.75 0.81 Ribosomal protein S19 Bacterial small subunit ribosomal RNA compare